mace 3D & 4D PR

Yang, Diyurequested to merge
pr/mace4D into master

Created by: dyang37

This is a pull request to merge mace3D and mace4D into master.

To test:

  1. checkout pr/mace4D branch: git checkout pr/mace4D, git pull
  2. Install requirements.txt: pip install -r requirements.txt
  3. Re-install mbircone: pip install .
  4. Install demo related packages: cd demo, pip install -r requirements_demo.txt
  5. Clear system matrix cache: rm -r ~/.cache/mbircone/
  6. Run demo:
  • mace3D: python demo_mace3D_fast.py
  • mace4D: python demo_mace4D_fast.py

Both demo should take about 5-10 minutes on cluster, and 15-20 minutes on a personal computer.

In addition, if you have access to the cluster and would like to perform a higher quality demo, you could run demo_mace3D.py and demo_mace4D.py (basically 3D/4D reconstructions with higher resolution phantoms).

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