Create ToDo.rst

ToDo.rst

+New features
+------------
+Core development
+~~~~~~~~~~~~~~~~
+* Data Generators
+*	Parallel framework for Processing - Should be similar to Optimize from Analysis.
+External user contributions
+~~~~~~~~~~~~~~~~~~~~~~~~~~~
+* Li Xin classification code 
+* Ondrej’s atom finding code – written but needs work before fully integrated
+*	Nina’s processing code (Tselev) – in progress
+* Sabine's cKPFM code
+* Josh Agar's convex hull
+* Other workflows/functions that already exist as scripts or notebooks
+
+Plotting updates
+----------------
+*	Switch to using plot.ly and dash for interactive elements
+*	Possibly use MayaVi for 3d plotting
+* Switch plot_map_stack order to (layer, x, y) from (x, y, layer)
+
+Examples / Tutorials
+--------------------
+Short notebooks / tutorials on how to use pycroscopy
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+*	Access h5 files
+*	Find a specific dataset/group in the file
+*	Select data within a dataset in various ways
+*	Specific function examples as needed
+* Writing data back to h5 - both creating a quick translator AND maing a quick analysis / processing routine on the fly
+    * Use the STS dataset as an example (simple and small 3D data)  
+    * micro datasets / microdata groups
+    * position and spectroscopic datasets
+    * chunking the main dataset
+    * ioHDF5
+    * linking as main etc.
+* Setting up interactive visualizers
+Longer examples (probably scientific workflows / pipelines)
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+*	Ttranslators – probably only one needed
+*	Processing
+  *	Clustering
+  *	Decomposition
+*	Analysis
+  *	How to use Optimize
+*	Vis
+
+Documentation
+-------------
+*	Switch to using Sphinx-gallery for documentation
+  *	Done for existing documentation
+  *	Work will be needed after examples are done
+*	Host docs somewhere other than readthedocs - On github?
+*	Include examples in documentation
+
+Formatting changes
+------------------
+*	Fix remaining PEP8 problems
+*	Ensure code and documentation is standardized
+*	Switch to standard version formatting
+*	Classes and major Functions should check to see if the results already exist
+
+Notebooks
+---------
+*	Add new workflows
+*	Direct downloading of notebooks (ipynb an html)
+  * nbviewer?
+  * Host somewhere other than github?
+*	Investigate using Jupyter hub and Jupyter lab
+
+Testing
+-------
+*	Write test code
+*	Unit tests for simple functions
+*	Longer tests using data (real or generated) for the workflow tests
+* Use Travis-CI for automatic testing, document generation, versioning, uploading, etc.