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Place new stitching result exports into the main output folder

Duggan, John requested to merge 38-handle-stitching-exports-when-config-output_folder-doesn-t-contain-a-stitching-subdirectory into main

Summary of Changes

When the user clicks "Export to Analysis Cluster", the new stitched profile will now be written to the main output folder. This avoids an error if the stitching subdirectory didn't exist before export. This will overwrite previously exported results.

Checklist

  • The MR has a clear and concise title
  • Code is self-documented and follows style guidelines.
  • Automated tests are written and pass successfully.
  • Regression tests (e.g. manually triggered system tests, manual GUI/tool tests, ...) are performed to make sure the MR does not break anything (when applicable)
  • Readme file is present and up-to-date.

Documentation Updates

Additional Notes

Closes #38 (closed)

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