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Handle stitching exports when config.output_folder doesn't contain a stitching subdirectory

We can do one of the following:

  1. Write stitching export files to the main output folder and overwrite the previous merged profile.
  2. Write stitching export files to the main output folder and append a timestamp or some other unique ID to each filename to keep all exported merged profiles.
  3. Figure out how to enforce that the stitching directory exists.