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    • John Chilton's avatar
      Allow setting file_actions in client via dict objects instead of paths. · 44e3b611
      John Chilton authored
      This should just work with new Galaxy YAML job configs, embedding paths to YAML files in XML config files was awkard.
      44e3b611
    • John Chilton's avatar
      Kubernetes staging w/test case. · f892f712
      John Chilton authored
      Testing for Kubernetes installed with Docker for Mac:
      
      - Run `make build-coexecutor-container`
      - Install and start rabbitmq on the localhost with Homebrew.
      - PULSAR_TEST_INFRASTRUCTURE_HOST=docker.for.mac.localhost  PULSAR_TEST_FILE_SERVER_HOST=0.0.0.0 PULSAR_RABBIT_MQ_CONNECTION='amqp://guest:guest@localhost:5672//' nosetests test/integration_test.py:ExternalQueueIntegrationTests.test_integration_kubernetes
      f892f712
    • John Chilton's avatar
      Improvements to pulsar-submit and testing. · 66e6daa3
      John Chilton authored
      Allow configuring the "pulsar" app from command-line with base64 encoded JSON so now shared file system with Pulsar container is needed. Improve "integration" testing to ensure staging up and down occurs with pulsar-submit.
      66e6daa3
    • John Chilton's avatar
      Implement coexecution manager. · e7f356b9
      John Chilton authored
      This manager is designed to just handle one job. It should be able to stage a job, write a command line to the job directory, and wait for an exit code to appear. Meant to be used alongside a container that actually runs the resulting tool.
      e7f356b9
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