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Update dependencies and conda solver in dockerfile

Cage, Gregory requested to merge 13-fix-conda-setup into main

Summary of Changes

Fixing the dependencies by bumping Ruby version (same as upstream Galaxy Training repo). Also, decided to use libmamba solver with conda rather than the previous mamba setup.

Checklist

  • The MR has a clear and concise title
  • Code is self-documented and follows style guidelines.
  • Automated tests are written and pass successfully.
  • Regression tests (e.g. manually triggered system tests, manual GUI/tool tests, ...) are performed to make sure the MR does not break anything (when applicable)
  • Readme file is present and up-to-date.

Documentation Updates

Additional Notes

Closes #13 (closed)

Edited by Cage, Gregory

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