Created by: dyang37
This PR contains the following things:
fixes to mace3D demos and partial fix to 3D shepp Logan demo.
Modified 3D shepp Logan generation to contain block-averaging from a higher resolution phantom (default block size 4x4x4).
The interface is shown below:
def gen_shepp_logan_3d(num_rows, num_cols, num_slices, block_size=(4,4,4)):
"""
Generate a smoothed 3D Shepp Logan phantom with block-averaging strategy.
The phantom will be generated by downsampling a higher resolution phantom with size (num_slices*block_size[0], num_rows*block_size[1], num_cols*block_size[2]) with block-averaging technique.
Args:
num_rows: int, number of rows.
num_cols: int, number of cols.
num_slices: int, number of slices.
block_size: (int, int, int): block averaging size. A larger block_size will generate a smoother Shepp Logan phantom.
Return:
out_image: 3D array, num_slices*num_rows*num_cols
"""Added phantom generation functions into readthedocs.
Re-organized 3D shepp Logan demo script to improve readability.
Tested everything with a new conda env.