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Issue #405 make Close call MPI_Comm_free in all Engines

Podhorszki, Norbert requested to merge github/fork/williamfgc/close_mpi into master

Created by: williamfgc

Close now calls a derived class DoClose (private) function and free the Communicator if all transports are closed. Remove MPI_Comm_free from Engine destructor. Modified all derived engines to pass tests

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