BPWrite_c -> ctypes
XMLConfigTest.TwoIOs -> Test BP Writer 1

Continue refactoring IO, ADIOS classes

Changed m_Transports from vector to map, needed by subfile manager

BP3 Deserialization:
Getting subfile seeks and intersection info
Set host language in bindings for row-major and zero-index info

Passed ctest (MPI and nonMPI) excluding ADIOS1 engine, and Python bindings
HDF5, C bindings and C++ tests working
Introduced BeginStep EndStep functions
Renamed IO GetVariable/Attribute to InquireVariable/Attribute

Getting and defining available Variables at Open
Storing Variable position in Metadata, added to VariableBase
mpidummy: Added support for MPI_Reduce, MPI_Gatherv
Added utils and BPLS

Implemented basic buffer reading functionality
Added threading for bp serialization/deserialization
Refactored MPI functionality
Engine is now a reference
Initial Read API

Added working example examples/hello/bpWriter/helloBPWriter.c
Changed Engine signature to resolve Write void* at runtime (required by
C bindings).

To do:
CMake infrastructure
Testing

Refactored IO, Variable class due to common functionality

Wrapper classes CompressBZip2 and CompressZfp implemented
Under transform/compress and adding examples and tests
Added/Modified cmake files
Makign changes to cmake from PR review

To do:
Add more tests

Restoring std:: for cstdio functions
Removing warnings explicitly with pragmas

Removed ADIOS copy constructor explicitly, as it wasn't allowed by clang
compiler in testing/xml/TestXMLConfig.cpp

Using more portable preprocessor definitions to avoid warning on Windows
for ctime and fopen

Introduced std::throw_with_nested for bad_alloc in STLVector Capsule

Removed std:: in C function calls to avoid confusion with actual C++
only calls

Bugs: 1) Missing binary mode in FilePointer fopen and FStream ofstream
transports
      2) Replacing reinterpret_cast of size_t to uint_64, not the same
on Windows 64-bit

Removed some warnings generated by Visual Studio

Added static_cast for type conversions

Refactor XML reader to restore original check on single engine
conditions and eliminate warnings. Test added.

Allow ctime and fopen "not secure" warnings: now using binary fstream as
default file IO library on Windows

Replace std::copy with std::memcpy in std::thread
Added threads to profiling.log
Limiting the use of threads

TO DO: large scale runs to enforce threads policy

If file doesn't exist, continue with run
Fixed bug if space before and after "=" in: <tag attribute1= "value1">

To do: need to discuss policy for config files, still experimental

Initial implementation of XML running with helloBPWriter example
Corrected bug in ADIOS.cpp when detecting IO in ConfigFile

Added example bpFlushWriter (incomplete).

Python bindings running but not printing values with bpls. Min and Max
captured correctly.

IO SetParameters and AddTransport will accept vector and map

Variable.cpp and Variable.tcc for complete separation of core components
in the public include

* fix more example code

* make Open explicit in ADIOS1 toolkit. Fix handling open mode

* fix OpenModeToString() to serve adios 1 API's needs as well

bool flag checks are implicit
Removed single letter enums in ADIOSTypes.h
All enums are enum class in ADIOSTypes.h using CamelCase
ADIOS uses delegating constructor
Using return type of emplace for IO (in ADIOS) and Variable (in IO)
Removed all base class include from inl template file

1 Now IO (replaced Method) and is the factory for Variables and Engines
2 Reduced core components to user-public objects only
3 Moved and reorganized all helper functions to helper directory
4 Engines are now lightweight (except for ADIOS1Reader WIP) using MACRO
5 HF5Common and ADIOS1Common (except for Readers WIP) are now part of the toolkit so they can be reused by Engines
6 TransportMan is a new layer for transport management (file is default)
7 DataMan will be implemented under toolkit/transportman/dataman
8 Template separation (tcc and inl) applied all over the code
9 Improved Doxygen documentation

Runtime Issues:
DataMan library compilation (cacheman)
ADIOS1 Warning
TestADIOSInterfaceWrite catches exceptions