examples/hello/bpWriter/hellBPPutDeferred.cpp

BPWrite_c -> ctypes
XMLConfigTest.TwoIOs -> Test BP Writer 1

Changed m_Transports from vector to map, needed by subfile manager

BP3 Deserialization:
Getting subfile seeks and intersection info
Set host language in bindings for row-major and zero-index info

Passed ctest (MPI and nonMPI) excluding ADIOS1 engine, and Python bindings
HDF5, C bindings and C++ tests working
Introduced BeginStep EndStep functions
Renamed IO GetVariable/Attribute to InquireVariable/Attribute

Getting and defining available Variables at Open
Storing Variable position in Metadata, added to VariableBase
mpidummy: Added support for MPI_Reduce, MPI_Gatherv
Added utils and BPLS

Implemented basic buffer reading functionality
Added threading for bp serialization/deserialization
Refactored MPI functionality
Engine is now a reference
Initial Read API

First working examples
To do:
Resolve conflicts
Add tests after merging with current master

Added test for generating profiling.json
Fixed inclusion for NLohmannJson json.hpp in Test
Tested resulting profiling.json on R (jsonlite), Python (json)
and C++ (json for modern C++)

Added example bpFlushWriter (incomplete).

To do:
Memory buffer reallocation strategy

Python bindings running but not printing values with bpls. Min and Max
captured correctly.

IO SetParameters and AddTransport will accept vector and map

Variable.cpp and Variable.tcc for complete separation of core components
in the public include

* fix more example code

* make Open explicit in ADIOS1 toolkit. Fix handling open mode

* fix OpenModeToString() to serve adios 1 API's needs as well

bool flag checks are implicit
Removed single letter enums in ADIOSTypes.h
All enums are enum class in ADIOSTypes.h using CamelCase
ADIOS uses delegating constructor
Using return type of emplace for IO (in ADIOS) and Variable (in IO)
Removed all base class include from inl template file

* fix more example code

* make Open explicit in ADIOS1 toolkit. Fix handling open mode

1 Now IO (replaced Method) and is the factory for Variables and Engines
2 Reduced core components to user-public objects only
3 Moved and reorganized all helper functions to helper directory
4 Engines are now lightweight (except for ADIOS1Reader WIP) using MACRO
5 HF5Common and ADIOS1Common (except for Readers WIP) are now part of the toolkit so they can be reused by Engines
6 TransportMan is a new layer for transport management (file is default)
7 DataMan will be implemented under toolkit/transportman/dataman
8 Template separation (tcc and inl) applied all over the code
9 Improved Doxygen documentation

Runtime Issues:
DataMan library compilation (cacheman)
ADIOS1 Warning
TestADIOSInterfaceWrite catches exceptions