examples/hello/bpWriter/hellBPPutDeferred.cpp

BPWrite_c -> ctypes
XMLConfigTest.TwoIOs -> Test BP Writer 1

Changed m_Transports from vector to map, needed by subfile manager

BP3 Deserialization:
Getting subfile seeks and intersection info
Set host language in bindings for row-major and zero-index info

Passed ctest (MPI and nonMPI) excluding ADIOS1 engine, and Python bindings
HDF5, C bindings and C++ tests working
Introduced BeginStep EndStep functions
Renamed IO GetVariable/Attribute to InquireVariable/Attribute

Getting and defining available Variables at Open
Storing Variable position in Metadata, added to VariableBase
mpidummy: Added support for MPI_Reduce, MPI_Gatherv
Added utils and BPLS

Implemented basic buffer reading functionality
Added threading for bp serialization/deserialization
Refactored MPI functionality
Engine is now a reference
Initial Read API

First working examples
To do:
Resolve conflicts
Add tests after merging with current master

Replace std::copy with std::memcpy in std::thread
Added threads to profiling.log
Limiting the use of threads

TO DO: large scale runs to enforce threads policy

Added example bpFlushWriter (incomplete).

1 Now IO (replaced Method) and is the factory for Variables and Engines
2 Reduced core components to user-public objects only
3 Moved and reorganized all helper functions to helper directory
4 Engines are now lightweight (except for ADIOS1Reader WIP) using MACRO
5 HF5Common and ADIOS1Common (except for Readers WIP) are now part of the toolkit so they can be reused by Engines
6 TransportMan is a new layer for transport management (file is default)
7 DataMan will be implemented under toolkit/transportman/dataman
8 Template separation (tcc and inl) applied all over the code
9 Improved Doxygen documentation

Runtime Issues:
DataMan library compilation (cacheman)
ADIOS1 Warning
TestADIOSInterfaceWrite catches exceptions

Created public function ResizeBuffer in BP1Writer

Adapted to the new code structure
BP1Writer is a self-contained class that can be reused across Engines
BP1Writer allows for threaded copies for large payloads

To do:
Data Buffer memory management strategy

Move adiosTemplates.h to adiosTemplate.inc