"examples/heatTransfer/write/IO_adios2.cpp" did not exist on "8f6bdac2d2fa140800c583ffefddb75691ae81ea"
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* Distributed under the OSI-approved Apache License, Version 2.0. See
* accompanying file Copyright.txt for details.
*
* DataManReader.cpp
*
* Created on: Feb 21, 2017
* Author: wfg
*/
#include "engine/dataman/DataManReader.h"
#include "core/Support.h"
#include "functions/adiosFunctions.h" //CSVToVector
// supported transports
#include "transport/file/FStream.h" // uses C++ fstream
#include "transport/wan/MdtmMan.h" //uses Mdtm library
#include "../../../include/transport/file/FileDescriptor.h" // uses POSIX
#include "../../../include/transport/file/FilePointer.h" // uses C FILE*
#include "DataMan.h" //here comes your DataMan header from external dataman library
namespace adios
{
DataManReader::DataManReader(ADIOS &adios, const std::string name,
const std::string accessMode, MPI_Comm mpiComm,
const Method &method, const IOMode iomode,
const float timeout_sec, const bool debugMode,
const unsigned int nthreads)
: Engine(adios, "DataManReader", name, accessMode, mpiComm, method, debugMode,
nthreads, " DataManReader constructor (or call to ADIOS Open).\n"),
m_Buffer(accessMode, m_RankMPI, m_DebugMode)
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{
Init();
}
DataManReader::~DataManReader() {}
void DataManReader::SetCallBack(
std::function<void(const void *, std::string, std::string, std::string,
Dims)>
callback)
{
m_CallBack = callback;
m_Man.reg_callback(callback);
}
Variable<void> *
DataManReader::InquireVariable(const std::string name,
const bool readIn) // not yet implemented
{
return nullptr;
}
Variable<char> *DataManReader::InquireVariableChar(const std::string name,
const bool readIn)
{
return InquireVariableCommon<char>(name, readIn);
}
Variable<unsigned char> *
DataManReader::InquireVariableUChar(const std::string name, const bool readIn)
{
return InquireVariableCommon<unsigned char>(name, readIn);
}
Variable<short> *DataManReader::InquireVariableShort(const std::string name,
const bool readIn)
{
return InquireVariableCommon<short>(name, readIn);
}
Variable<unsigned short> *
DataManReader::InquireVariableUShort(const std::string name, const bool readIn)
{
return InquireVariableCommon<unsigned short>(name, readIn);
}
Variable<int> *DataManReader::InquireVariableInt(const std::string name,
const bool readIn)
{
return InquireVariableCommon<int>(name, readIn);
}
Variable<unsigned int> *
DataManReader::InquireVariableUInt(const std::string name, const bool readIn)
{
return InquireVariableCommon<unsigned int>(name, readIn);
}
Variable<long int> *DataManReader::InquireVariableLInt(const std::string name,
const bool readIn)
{
return InquireVariableCommon<long int>(name, readIn);
}
Variable<unsigned long int> *
DataManReader::InquireVariableULInt(const std::string name, const bool readIn)
{
return InquireVariableCommon<unsigned long int>(name, readIn);
}
Variable<long long int> *
DataManReader::InquireVariableLLInt(const std::string name, const bool readIn)
{
return InquireVariableCommon<long long int>(name, readIn);
}
Variable<unsigned long long int> *
DataManReader::InquireVariableULLInt(const std::string name, const bool readIn)
{
return InquireVariableCommon<unsigned long long int>(name, readIn);
}
Variable<float> *DataManReader::InquireVariableFloat(const std::string name,
const bool readIn)
{
return InquireVariableCommon<float>(name, readIn);
}
Variable<double> *DataManReader::InquireVariableDouble(const std::string name,
const bool readIn)
{
return InquireVariableCommon<double>(name, readIn);
}
Variable<long double> *
DataManReader::InquireVariableLDouble(const std::string name, const bool readIn)
{
return InquireVariableCommon<long double>(name, readIn);
}
Variable<std::complex<float>> *
DataManReader::InquireVariableCFloat(const std::string name, const bool readIn)
{
return InquireVariableCommon<std::complex<float>>(name, readIn);
}
Variable<std::complex<double>> *
DataManReader::InquireVariableCDouble(const std::string name, const bool readIn)
{
return InquireVariableCommon<std::complex<double>>(name, readIn);
}
Variable<std::complex<long double>> *
DataManReader::InquireVariableCLDouble(const std::string name,
const bool readIn)
{
return InquireVariableCommon<std::complex<long double>>(name, readIn);
}
VariableCompound *DataManReader::InquireVariableCompound(const std::string name,
const bool readIn)
{
return nullptr;
}
void DataManReader::Close(const int transportIndex) {}
// PRIVATE
void DataManReader::Init()
{
if (m_DebugMode == true)
{
if (m_AccessMode != "r" && m_AccessMode != "read")
throw std::invalid_argument(
"ERROR: DataManReader doesn't support access mode " + m_AccessMode +
", in call to ADIOS Open or DataManReader constructor\n");
}
auto itRealTime = m_Method.m_Parameters.find("real_time");
if (itRealTime != m_Method.m_Parameters.end())
{
if (itRealTime->second == "yes" || itRealTime->second == "true")
m_DoRealTime = true;
}
if (m_DoRealTime)
{
/**
* Lambda function that assigns a parameter in m_Method to a localVariable
* of type std::string
*/
auto lf_AssignString = [this](const std::string parameter,
std::string &localVariable) {
auto it = m_Method.m_Parameters.find(parameter);
if (it != m_Method.m_Parameters.end())
{
localVariable = it->second;
}
};
/**
* Lambda function that assigns a parameter in m_Method to a localVariable
* of type int
*/
auto lf_AssignInt = [this](const std::string parameter,
int &localVariable) {
auto it = m_Method.m_Parameters.find(parameter);
if (it != m_Method.m_Parameters.end())
{
localVariable = std::stoi(it->second);
}
};
auto is_number = [](const std::string &s) {
return !s.empty() && std::find_if(s.begin(), s.end(), [](char c) {
return !std::isdigit(c);
}) == s.end();
};
json jmsg;
for (auto &i : m_Method.m_Parameters)
{
if (is_number(i.second))
{
jmsg[i.first] = std::stoi(i.second);
}
else
{
jmsg[i.first] = i.second;
}
}
jmsg["stream_mode"] = "receiver";
m_Man.add_stream(jmsg);
std::string method_type;
int num_channels = 0;
lf_AssignString("method_type", method_type);
lf_AssignInt("num_channels", num_channels);
}
else
{
InitCapsules();
InitTransports();
}
}
void DataManReader::InitCapsules()
{
// here init memory capsules
}
void DataManReader::InitTransports() // maybe move this?
{
TransportNamesUniqueness();
for (const auto ¶meters : m_Method.m_TransportParameters)
{
auto itTransport = parameters.find("transport");
if (itTransport->second == "Mdtm" || itTransport->second == "MdtmMan")
{
const std::string localIP(
GetMdtmParameter("localIP", parameters)); // mandatory
const std::string remoteIP(
GetMdtmParameter("remoteIP", parameters)); // mandatory
const std::string prefix(GetMdtmParameter("prefix", parameters));
const int numberOfPipes =
std::stoi(GetMdtmParameter("pipes", parameters));
const std::vector<int> tolerances =
CSVToVectorInt(GetMdtmParameter("tolerances", parameters));
const std::vector<int> priorities =
CSVToVectorInt(GetMdtmParameter("priorities", parameters));
m_Transports.push_back(std::make_shared<transport::MdtmMan>(
localIP, remoteIP, m_AccessMode, prefix, numberOfPipes, tolerances,
priorities, m_MPIComm, m_DebugMode));
}
else if (itTransport->second == "Zmq")
{
}
else
{
if (m_DebugMode == true)
throw std::invalid_argument(
"ERROR: transport + " + itTransport->second +
" not supported, in " + m_Name + m_EndMessage);
}
}
}
std::string DataManReader::GetMdtmParameter(
const std::string parameter,
const std::map<std::string, std::string> &mdtmParameters)
{
auto itParam = mdtmParameters.find(parameter);
if (itParam != mdtmParameters.end()) // found
{
return itParam->second; // return value
}
// if not found
// mandatory ones
if (parameter == "localIP" || parameter == "remoteIP")
{
if (m_DebugMode == true)
throw std::invalid_argument("ERROR: " + parameter +
" parameter not found in Method, in call to "
"DataManWriter constructor\n");
}
else if (parameter == "prefix")
{
return "";
}
else if (parameter == "pipes")
{
return "0"; // or 1?
}
else if (parameter == "tolerances") // so far empty string
{
}
else if (parameter == "priority")
{
}
return ""; // return empty string
}
}