Unverified Commit 6f0cdeea authored by Sandro Jäckel's avatar Sandro Jäckel Committed by GitHub
Browse files

Merge pull request #186459 from apraga/biodbhts-3.01 

BioDBHTS : init 3.01
parents 3db8340b 5a7558f2

pkgs/top-level/perl-packages.nix

+28 −0
Original line number Diff line number Diff line
@@ -1623,6 +1623,34 @@ with self; { 














  BioExtAlign = callPackage ../development/perl-modules/Bio-Ext-Align { };



























  BioDBHTS = buildPerlModule {













    pname = "Bio-DB-HTS";













    version = "3.01";













    src = fetchurl {













      url = "mirror://cpan/authors/id/A/AV/AVULLO/Bio-DB-HTS-3.01.tar.gz";













      sha256 = "12a6bc1f579513cac8b9167cce4e363655cc8eba26b7d9fe1170dfe95e044f42";













    };

























    buildInputs = [ pkgs.htslib pkgs.zlib ];

























    propagatedBuildInputs = [ BioPerl ];













    htslibStore = toString pkgs.htslib;

























    postPatch = ''













      # -Wl,-rpath not recognized : replaced by -rpath=













      sed -i 's/Wl,-rpath,/rpath=/' Build.PL













    '';

























    preBuild = ''













      export HTSLIB_DIR=${pkgs.htslib}













    '';

























    meta = {













      description = "Perl interface to HTS library for DNA sequencing";













      license = lib.licenses.asl20;













    };













  };



























  BioPerl = buildPerlPackage {















    pname = "BioPerl";















    version = "1.7.8";