Unverified Commit 313155cc authored by Pol Dellaiera's avatar Pol Dellaiera Committed by GitHub
Browse files

python3Packages.{imagecodecs, sdflit, swcgeom}: init at {2025.3.30, 0.2.6, 0.19.3} (#399413)

parents d93cea6c dab40555

pkgs/development/python-modules/imagecodecs/default.nix

0 → 100644
+90 −0
Original line number Diff line number Diff line 
{

  lib,

  buildPythonPackage,

  fetchFromGitHub,

  cython,

  numpy,

  setuptools,

  pkgs,

  jxrlib,

  lcms2,

  lerc,

  libdeflate,

  libpng,

  libtiff,

  libwebp,

  openjpeg,

  xz,

  zlib,

  zstd,

  pytest,

}:



let

  version = "2025.3.30";

in

buildPythonPackage {

  pname = "imagecodecs";

  inherit version;

  pyproject = true;



  src = fetchFromGitHub {

    owner = "cgohlke";

    repo = "imagecodecs";

    tag = "v${version}";

    hash = "sha256-KtrQNABQOr3mNiWOfaZBcFceSCixPGV8Hte2uPKn1+k=";

  };



  build-system = [

    cython

    numpy

    setuptools

  ];



  nativeBuildInputs = [

    pkgs.lz4.dev # lz4 was hidden by python3Packages.lz4

    lcms2.dev

    openjpeg.dev

  ];



  buildInputs = [

    pkgs.lz4

    jxrlib

    lcms2

    lerc

    libdeflate

    libpng

    libtiff

    libwebp

    openjpeg

    xz # liblzma

    zlib

    zstd

  ];



  dependencies = [

    numpy

  ];



  prePatch = ''

    substituteInPlace setup.py \

      --replace-fail "/usr/include/openjpeg" "${openjpeg.dev}/include/openjpeg" \

      --replace-fail "/usr/include/jxrlib" "${jxrlib}/include/jxrlib"

  '';



  nativeCheckInputs = [

    pytest

  ];



  pythonImportsCheck = [

    "imagecodecs"

  ];



  meta = {

    description = "Image transformation, compression, and decompression codecs";

    homepage = "https://github.com/cgohlke/imagecodecs";

    changelog = "https://github.com/cgohlke/imagecodecs/blob/v${version}/CHANGES.rst";

    license = lib.licenses.bsd3;

    maintainers = with lib.maintainers; [ yzx9 ];

  };

}

pkgs/development/python-modules/sdflit/default.nix

0 → 100644
+47 −0
Original line number Diff line number Diff line 
{

  lib,

  fetchFromGitHub,

  buildPythonPackage,

  cargo,

  rustPlatform,

  rustc,

}:



let

  version = "0.2.6";



  src = fetchFromGitHub {

    owner = "yzx9";

    repo = "sdflit";

    tag = "v${version}";

    hash = "sha256-Ze3J5Dp+TskhIiGP6kMK3AIHLnhVBuEaKJokccIr+SM=";

  };

in

buildPythonPackage {

  pname = "sdflit";

  inherit version src;

  pyproject = true;



  cargoDeps = rustPlatform.fetchCargoVendor {

    inherit src;

    hash = "sha256-CrMe5DuO9sQZZ50Hy+av4nF4gbOe296zSWJfJ8th7zs=";

  };



  build-system = [

    cargo

    rustPlatform.cargoSetupHook

    rustPlatform.maturinBuildHook

    rustc

  ];



  pythonImportsCheck = [

    "sdflit"

  ];



  meta = {

    description = "Fast and Robust Signed Distance Function Library";

    homepage = "https://github.com/yzx9/sdflit";

    license = lib.licenses.asl20;

    maintainers = with lib.maintainers; [ yzx9 ];

  };

}

pkgs/development/python-modules/swcgeom/default.nix

0 → 100644
+90 −0
Original line number Diff line number Diff line 
{

  lib,

  buildPythonPackage,

  fetchFromGitHub,

  cython,

  numpy,

  setuptools,

  wheel,

  imagecodecs,

  matplotlib,

  pandas,

  pynrrd,

  scipy,

  sdflit,

  seaborn,

  tifffile,

  tqdm,

  typing-extensions,

  beautifulsoup4,

  certifi,

  chardet,

  lmdb,

  requests,

  urllib3,

  pytest,

}:



let

  version = "0.19.3";

in

buildPythonPackage {

  pname = "swcgeom";

  inherit version;

  pyproject = true;



  src = fetchFromGitHub {

    owner = "yzx9";

    repo = "swcgeom";

    tag = "v${version}";

    hash = "sha256-mpp8Dw0XcU59fYt7vjswAnXCmrRP3mhbgTDG+J4UwzI=";

  };



  build-system = [

    cython

    numpy

    setuptools

    wheel

  ];



  dependencies = [

    imagecodecs

    matplotlib

    numpy

    pandas

    pynrrd

    scipy

    sdflit

    seaborn

    tifffile

    tqdm

    typing-extensions

  ];



  optional-dependencies = {

    all = [

      beautifulsoup4

      certifi

      chardet

      lmdb

      requests

      urllib3

    ];

  };



  nativeCheckInputs = [

    pytest

  ];



  pythonImportsCheck = [

    "swcgeom"

  ];



  meta = {

    description = "Neuron geometry library for swc format";

    homepage = "https://github.com/yzx9/swcgeom";

    changelog = "https://github.com/yzx9/swcgeom/blob/v${version}/CHANGELOG.md";

    license = lib.licenses.asl20;

    maintainers = with lib.maintainers; [ yzx9 ];

  };

}

pkgs/top-level/python-packages.nix

+6 −0
Original line number Diff line number Diff line
@@ -6636,6 +6636,8 @@ self: super: with self; { 














  image-go-nord = callPackage ../development/python-modules/image-go-nord { };



























  imagecodecs = callPackage ../development/python-modules/imagecodecs { };



























  imagecodecs-lite = callPackage ../development/python-modules/imagecodecs-lite { };





























  imagecorruptions = callPackage ../development/python-modules/imagecorruptions { };










@@ -15584,6 +15586,8 @@ self: super: with self; {



























  sdds = callPackage ../development/python-modules/sdds { };



























  sdflit = callPackage ../development/python-modules/sdflit { };



























  sdjson = callPackage ../development/python-modules/sdjson { };





























  sdkmanager = callPackage ../development/python-modules/sdkmanager { };










@@ -16865,6 +16869,8 @@ self: super: with self; {



























  swagger-ui-bundle = callPackage ../development/python-modules/swagger-ui-bundle { };



























  swcgeom = callPackage ../development/python-modules/swcgeom { };



























  swh-auth = callPackage ../development/python-modules/swh-auth { };





























  swh-core = callPackage ../development/python-modules/swh-core { };