Refactor to use Python template
Summary of Changes
Applied our template. Lots of changes due to linting/typing.
Checklist
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The MR has a clear and concise title -
Code is self-documented and follows style guidelines. -
Automated tests are written and pass successfully. -
Regression tests (e.g. manually triggered system tests, manual GUI/tool tests, ...) are performed to make sure the MR does not break anything (when applicable) -
Readme file is present and up-to-date.
Documentation Updates
Additional Notes
Closes #24 (closed)