Probably not needed - only hit the error condition because of other bugs - but I guess it is not hurting anything.

Forces a full setup step without having to actually create a non-empty setup_params dictionary. Galaxy would always pass a tool id and stuff in setup_params - but these should be optional.

Want to reuse it in a test.

Useful for debugging deadlock situtations.

(In case I need it in the future again.)

Eliminates required dependency on paste for Python 3 (though still need to update actual code for Python 3).

 - In setup.py don't depend on paste if Python 3.
 - All development dependencies are now compatible with Python 2 and Python 3, remove dev-requirements3.txt.

Various syntax problems since the last time I worked on Python 3 support.

This does indicate a problem with the tool shed install translation to the remote server though.

Docs build fine with 1.3 - but there is a new warning which causes linting them to fail and 1.2 is what is used by readthedocs.org as far as I can tell.

If there is some problem that causes the Pulsar client in the job handler to stop logging, this really should be logged now.

 - Add a join timeout incase this is is where things are hanging.
 - Don't allow heartbeat or sleep exceptions to halt queue consumption - shutdown events need to fire to actually stop this computation.
 - Add more logging to determine if this is a problematic spot.

 - Don't ack requeued messages (missing return seems like it was a bug).
 - More logging around this event.

Both still largely WIP.

- Just add PyYaml as required dependency - doesn't seem problematic
under Windows.
- Update setup.py to conditionally install nix bash script or Windows
bat script depending on platform.
- Outline some work on bootstrapping Pulsar install via PyPI (should be
merged into scripts/config.py at some point).
- Version update to PyPI publication tests.

Go further than runtime and ensure threads join so that they cannot interfer with other tests.

Doesn't work on 2.6, planemo has same hack.

Check for sphinx warnings after filtering some uninteresting ones out.

 - Catch invalid action type definition and report it as such.