Commit 6e83aadb authored by Cage, Gregory's avatar Cage, Gregory
Browse files

Rename Nova to connection and update documentation

parent a6617bd2

docs/examples/basic_usage.rst

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@@ -7,11 +7,11 @@ This example demonstrates how to upload a dataset to Galaxy and run a tool using 


.. code-block:: python



   from nova.galaxy import Nova, Dataset, Tool, Parameters

   from nova.galaxy import Connection, Dataset, Tool, Parameters



   galaxy_url = "your_galaxy_url"

   galaxy_key = "your_galaxy_api_key"

   nova = Nova(galaxy_url, galaxy_key)

   nova = Connection(galaxy_url, galaxy_key)



   with nova.connect() as conn:

       # Create a data store

docs/examples/dataset_collections.rst

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@@ -11,7 +11,7 @@ This example illustrates how to work with dataset collections (note that uploadi 


   galaxy_url = "your_galaxy_url"

   galaxy_key = "your_galaxy_api_key"

   nova = Nova(galaxy_url, galaxy_key)

   nova = Connection(galaxy_url, galaxy_key)



   with nova.connect() as conn:

       data_store = conn.create_data_store("Collection Example")

docs/examples/interactive_tool_usage.rst

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@@ -11,7 +11,7 @@ This example demonstrates how to run an interactive tool and retrieve its URL. 


   galaxy_url = "your_galaxy_url"

   galaxy_key = "your_galaxy_api_key"

   nova = Nova(galaxy_url, galaxy_key)

   nova = Connection(galaxy_url, galaxy_key)



   with nova.connect() as conn:

       data_store = conn.create_data_store("Interactive Tool Example")

docs/examples/multiple_inputs.rst

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@@ -11,7 +11,7 @@ This example shows how to run a tool that takes multiple datasets as input. 


   galaxy_url = "your_galaxy_url"

   galaxy_key = "your_galaxy_api_key"

   nova = Nova(galaxy_url, galaxy_key)

   nova = Connection(galaxy_url, galaxy_key)



   with nova.connect() as conn:

       data_store = conn.create_data_store("Multi-Input Example")

pyproject.toml

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[tool.poetry]

name = "nova-galaxy"

version = "0.6.2"

version = "0.7.0"

description = "Utilties for accessing the ORNL Galaxy instance"

authors = ["Greg Watson <watsongr@ornl.gov>", "Gregory Cage <cagege@ornl.gov>"]

readme = "README.md"