Commit 5f39ecc0 authored by Cage, Gregory's avatar Cage, Gregory
Browse files

Merge branch 'nova-galaxy-url-issue' into 'main' 

Update to 0.7.0

Closes #23

See merge request ndip/public-packages/nova-galaxy!13
parents ebeea040 db0ea32c

CHANGELOG.md

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### Nova Galaxy, 0.7.0

- Reworks some issues where the url was trying to be fetched in scenarios where it would take the full timeout (thanks to Gregory Cage).  [Merge Request 13](https://code.ornl.gov/ndip/public-packages/nova-galaxy/-/merge_requests/13)

- Added a lot more user documentation (thanks to Gregory Cage).  [Merge Request 13](https://code.ornl.gov/ndip/public-packages/nova-galaxy/-/merge_requests/13)

- Changed the Workstate enum to have string values (much more useful when trying to serialize the value) (thanks to Gregory Cage).  [Merge Request 13](https://code.ornl.gov/ndip/public-packages/ndip-galaxy/-/merge_requests/13)

- Changes Nova class name to Connection, and NovaConnection to ConnectionHelper (thanks to Gregory Cage).  [Merge Request 13](https://code.ornl.gov/ndip/public-packages/ndip-galaxy/-/merge_requests/13)



### Nova Galaxy, 0.6.1

- Fix dictionary bug with data stores (thanks to Gregory Cage). [Merge Request 12](https://code.ornl.gov/ndip/public-packages/ndip-galaxy/-/merge_requests/12)



### Nova Galaxy, 0.6.0

- Add recovery for data stores (thanks to Gregory Cage). [Merge Request 10](https://code.ornl.gov/ndip/public-packages/ndip-galaxy/-/merge_requests/10)

- Add IDs to tools (thanks to Gregory Cage). [Merge Request 10](https://code.ornl.gov/ndip/public-packages/ndip-galaxy/-/merge_requests/10)

docs/examples/basic_usage.rst

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@@ -7,11 +7,11 @@ This example demonstrates how to upload a dataset to Galaxy and run a tool using 


.. code-block:: python



   from nova.galaxy import Nova, Dataset, Tool, Parameters

   from nova.galaxy import Connection, Dataset, Tool, Parameters



   galaxy_url = "your_galaxy_url"

   galaxy_key = "your_galaxy_api_key"

   nova = Nova(galaxy_url, galaxy_key)

   nova = Connection(galaxy_url, galaxy_key)



   with nova.connect() as conn:

       # Create a data store

docs/examples/dataset_collections.rst

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@@ -11,7 +11,7 @@ This example illustrates how to work with dataset collections (note that uploadi 


   galaxy_url = "your_galaxy_url"

   galaxy_key = "your_galaxy_api_key"

   nova = Nova(galaxy_url, galaxy_key)

   nova = Connection(galaxy_url, galaxy_key)



   with nova.connect() as conn:

       data_store = conn.create_data_store("Collection Example")

docs/examples/interactive_tool_usage.rst

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@@ -11,7 +11,7 @@ This example demonstrates how to run an interactive tool and retrieve its URL. 


   galaxy_url = "your_galaxy_url"

   galaxy_key = "your_galaxy_api_key"

   nova = Nova(galaxy_url, galaxy_key)

   nova = Connection(galaxy_url, galaxy_key)



   with nova.connect() as conn:

       data_store = conn.create_data_store("Interactive Tool Example")

docs/examples/multiple_inputs.rst

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@@ -11,7 +11,7 @@ This example shows how to run a tool that takes multiple datasets as input. 


   galaxy_url = "your_galaxy_url"

   galaxy_key = "your_galaxy_api_key"

   nova = Nova(galaxy_url, galaxy_key)

   nova = Connection(galaxy_url, galaxy_key)



   with nova.connect() as conn:

       data_store = conn.create_data_store("Multi-Input Example")