Commit 34b6c85c authored by Duggan, John's avatar Duggan, John
Browse files

Fix env references

parent d804b6b7
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+2 −2
Original line number Diff line number Diff line
@@ -43,8 +43,8 @@ jobs:
      - name: Run mypy
        run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run mypy .
      - name: Unit tests
        run: docker run -e GALAXY_URL NOVA_GALAXY_TEST_GALAXY_KEY=${GALAXY_KEY} -e NOVA_GALAXY_TEST_GALAXY_URL=${GALAXY_URL} --rm ${{ steps.build.outputs.imageid }} poetry run pytest
        run: docker run -e GALAXY_URL NOVA_GALAXY_TEST_GALAXY_KEY=${{ env.GALAXY_KEY }} -e NOVA_GALAXY_TEST_GALAXY_URL=${{ env.GALAXY_URL }} --rm ${{ steps.build.outputs.imageid }} poetry run pytest
      - name: Run coverage
        run: docker run -e GALAXY_URL NOVA_GALAXY_TEST_GALAXY_KEY=${GALAXY_KEY} -e NOVA_GALAXY_TEST_GALAXY_URL=${GALAXY_URL} --rm ${{ steps.build.outputs.imageid }} sh -c "poetry run coverage run && poetry run coverage report"
        run: docker run -e GALAXY_URL NOVA_GALAXY_TEST_GALAXY_KEY=${{ env.GALAXY_KEY }} -e NOVA_GALAXY_TEST_GALAXY_URL=${{ env.GALAXY_URL }} --rm ${{ steps.build.outputs.imageid }} sh -c "poetry run coverage run && poetry run coverage report"
      - name: Docs test
        run: docker run --rm ${{ steps.build.outputs.imageid }} bash build_docs.sh