Commit d804b6b7 authored by Duggan, John's avatar Duggan, John
Browse files

Use GALAXY keys to run tests

parent b37f9dae

.github/workflows/build-test.yml

+4 −2
Original line number Diff line number Diff line
@@ -10,6 +10,8 @@ env: 
  NDIP_DOCKER_REPOSITORY: "${{ secrets.NDIP_DOCKER_REPOSITORY }}"

  READTHEDOCS_WEBHOOK_URL: "${{ secrets.READTHEDOCS_WEBHOOK_URL }}"

  READTHEDOCS_WEBHOOK_SECRET: "${{ secrets.READTHEDOCS_WEBHOOK_SECRET }}"

  GALAXY_URL: "${{ secrets.GALAXY_URL }}"

  GALAXY_KEY: "${{ secrets.GALAXY_KEY }}"



jobs:

  build-and-test:
@@ -41,8 +43,8 @@ jobs: 
      - name: Run mypy

        run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run mypy .

      - name: Unit tests

        run: docker run --rm ${{ steps.build.outputs.imageid }} poetry run pytest

        run: docker run -e GALAXY_URL NOVA_GALAXY_TEST_GALAXY_KEY=${GALAXY_KEY} -e NOVA_GALAXY_TEST_GALAXY_URL=${GALAXY_URL} --rm ${{ steps.build.outputs.imageid }} poetry run pytest

      - name: Run coverage

        run: docker run --rm ${{ steps.build.outputs.imageid }} sh -c "poetry run coverage run && poetry run coverage report"

        run: docker run -e GALAXY_URL NOVA_GALAXY_TEST_GALAXY_KEY=${GALAXY_KEY} -e NOVA_GALAXY_TEST_GALAXY_URL=${GALAXY_URL} --rm ${{ steps.build.outputs.imageid }} sh -c "poetry run coverage run && poetry run coverage report"

      - name: Docs test

        run: docker run --rm ${{ steps.build.outputs.imageid }} bash build_docs.sh