Commit d8c56145 authored by Lucille Delisle's avatar Lucille Delisle
Browse files

prevent sniff

parent 5f71740e

lib/galaxy/datatypes/interval.py

+4 −3
Original line number Diff line number Diff line
@@ -1734,7 +1734,7 @@ class ScIdx(Tabular): 
class IntervalTabix(Interval):

    """

    Class describing the bgzip format (http://samtools.github.io/hts-specs/SAMv1.pdf)

    As tabix is just a bgzip with an index

    As tabix is just a bgzip sorted for chr,start,end with an index

    """



    file_ext = "interval_tabix"
@@ -1758,8 +1758,9 @@ class IntervalTabix(Interval): 
        optional=True,

    )



    # We don't want to define sniff as the index would be created before the metadata on columns set.

    # def sniff(self, filename):

    # We don't want to have a good sniff as the index would be created before the metadata on columns is set.

    def sniff_prefix(self, file_prefix: FilePrefix):

        return False

    #     # Check that the file is compressed with bgzip (not gzip), i.e. the

    #     # compressed format is BGZF, as explained in

    #     # http://samtools.github.io/hts-specs/SAMv1.pdf