Commit 5f71740e authored by Lucille Delisle's avatar Lucille Delisle
Browse files

change file_ext

parent 8ce7bd8f

lib/galaxy/datatypes/interval.py

+4 −4
Original line number Diff line number Diff line
@@ -1737,7 +1737,7 @@ class IntervalTabix(Interval): 
    As tabix is just a bgzip with an index

    """



    file_ext = "tabix"

    file_ext = "interval_tabix"

    edam_format = "format_3616"

    compressed = True

    compressed_format = "gzip"
@@ -1810,7 +1810,7 @@ class JuicerMediumTabix(IntervalTabix): 
    mapq = mapping quality score

    """



    file_ext = "juicer.medium.tabix"

    file_ext = "juicer_medium_tabix"



    # The MetadataElements are readonly so the user cannot change them (as the index is generated only once)

    MetadataElement(name="chromCol", default=3, desc="Chrom column", param=metadata.ColumnParameter, readonly=True)
@@ -1823,7 +1823,7 @@ class BedTabix(IntervalTabix): 
    Class describing a tabix file built from a bed file

    """



    file_ext = "bed.tabix"

    file_ext = "bed_tabix"





class GffTabix(IntervalTabix):
@@ -1831,7 +1831,7 @@ class GffTabix(IntervalTabix): 
    Class describing a tabix file built from a bed file

    """



    file_ext = "gff.tabix"

    file_ext = "gff_tabix"



    # The MetadataElements are readonly so the user cannot change them (as the index is generated only once)

    MetadataElement(name="startCol", default=4, desc="Start column", param=metadata.ColumnParameter, readonly=True)