Loading .gitlab-ci.yml +2 −2 Original line number Diff line number Diff line Loading @@ -9,8 +9,8 @@ variables: CONTAINER_GALAXY_URL: "${NDIP_DOCKER_REPOSITORY}/${CI_PROJECT_PATH}" CONTAINER_GALAXY_BASE_URL: "${CONTAINER_GALAXY_URL}/base" CONTAINER_GALAXY_COMMIT_URL: "${CONTAINER_GALAXY_URL}/commit" GALAXY_VERSION_PYTHON: 25.1.dev4+ornl GALAXY_VERSION_DOCKER: 25.1.dev4.ornl GALAXY_VERSION_PYTHON: 25.1.dev5+ornl GALAXY_VERSION_DOCKER: 25.1.dev5.ornl # This import is for the func_rse_docker_* functions before_script: Loading lib/galaxy/authnz/managers.py +20 −16 Original line number Diff line number Diff line Loading @@ -305,23 +305,27 @@ class AuthnzManager: raise exceptions.ItemAccessibilityException(msg) def refresh_expiring_oidc_tokens_for_provider(self, trans, auth): with open("/tmp/galaxy_refresh_lock", "w") as lock: try: fcntl.flock(lock, fcntl.LOCK_EX | fcntl.LOCK_NB) success, message, backend = self._get_authnz_backend(auth.provider) if success is False: msg = f"An error occurred when refreshing user token on `{auth.provider}` identity provider: {message}" log.error(msg) return False log.debug("Attempting to acquire refresh lock") with open("/tmp/galaxy_refresh_lock", "w") as lock: fcntl.flock(lock, fcntl.LOCK_EX | fcntl.LOCK_NB) log.debug("Acquired refresh lock") refreshed = backend.refresh(trans.sa_session, auth, 30) if refreshed: log.debug(f"Refreshed user token via `{auth.provider}` identity provider") log.debug( f"Refreshed user token via `{auth.provider}` identity provider" ) return True except BlockingIOError: log.debug("Another process is refreshing, skipping") return True except Exception as e: log.exception("An error occurred when refreshing user token") log.exception(f"An error occurred when refreshing user token: {str(e)}") return False def refresh_expiring_oidc_tokens(self, trans, user=None): Loading Loading
.gitlab-ci.yml +2 −2 Original line number Diff line number Diff line Loading @@ -9,8 +9,8 @@ variables: CONTAINER_GALAXY_URL: "${NDIP_DOCKER_REPOSITORY}/${CI_PROJECT_PATH}" CONTAINER_GALAXY_BASE_URL: "${CONTAINER_GALAXY_URL}/base" CONTAINER_GALAXY_COMMIT_URL: "${CONTAINER_GALAXY_URL}/commit" GALAXY_VERSION_PYTHON: 25.1.dev4+ornl GALAXY_VERSION_DOCKER: 25.1.dev4.ornl GALAXY_VERSION_PYTHON: 25.1.dev5+ornl GALAXY_VERSION_DOCKER: 25.1.dev5.ornl # This import is for the func_rse_docker_* functions before_script: Loading
lib/galaxy/authnz/managers.py +20 −16 Original line number Diff line number Diff line Loading @@ -305,23 +305,27 @@ class AuthnzManager: raise exceptions.ItemAccessibilityException(msg) def refresh_expiring_oidc_tokens_for_provider(self, trans, auth): with open("/tmp/galaxy_refresh_lock", "w") as lock: try: fcntl.flock(lock, fcntl.LOCK_EX | fcntl.LOCK_NB) success, message, backend = self._get_authnz_backend(auth.provider) if success is False: msg = f"An error occurred when refreshing user token on `{auth.provider}` identity provider: {message}" log.error(msg) return False log.debug("Attempting to acquire refresh lock") with open("/tmp/galaxy_refresh_lock", "w") as lock: fcntl.flock(lock, fcntl.LOCK_EX | fcntl.LOCK_NB) log.debug("Acquired refresh lock") refreshed = backend.refresh(trans.sa_session, auth, 30) if refreshed: log.debug(f"Refreshed user token via `{auth.provider}` identity provider") log.debug( f"Refreshed user token via `{auth.provider}` identity provider" ) return True except BlockingIOError: log.debug("Another process is refreshing, skipping") return True except Exception as e: log.exception("An error occurred when refreshing user token") log.exception(f"An error occurred when refreshing user token: {str(e)}") return False def refresh_expiring_oidc_tokens(self, trans, user=None): Loading