Loading config/job_conf.yml.interactivetools +2 −2 Original line number Diff line number Diff line Loading @@ -41,8 +41,8 @@ execution: #docker_cmd: /usr/local/custom_docker/docker #docker_host: #docker_container_id_override: busybox:ubuntu-14.04 #docker_default_container_id: busybox:ubuntu-14.04 #docker_container_id_override: busybox:1.36.1-glibc #docker_default_container_id: busybox:1.36.1-glibc #require_container: true #container_monitor: true #container_monitor_result: file Loading doc/source/admin/jobs.md +1 −1 Original line number Diff line number Diff line Loading @@ -159,7 +159,7 @@ execution: k8s_namespace: default runner: pulsar_k8s docker_enabled: true docker_default_container_id: busybox:ubuntu-14.04 docker_default_container_id: busybox:1.36.1-glibc pulsar_app_config: message_queue_url: 'amqp://guest:guest@host.docker.internal:5672//' local_environment: Loading doc/source/admin/special_topics/interactivetools.rst +2 −2 Original line number Diff line number Diff line Loading @@ -172,8 +172,8 @@ An example ``job_conf.yml`` file as seen in ``config/job_conf.yml.interactivetoo #docker_cmd: /usr/local/custom_docker/docker #docker_host: #docker_container_id_override: busybox:ubuntu-14.04 #docker_default_container_id: busybox:ubuntu-14.04 #docker_container_id_override: busybox:1.36.1-glibc #docker_default_container_id: busybox:1.36.1-glibc #require_container: true #container_monitor: true #container_monitor_result: file Loading doc/source/admin/special_topics/mulled_containers.rst +1 −1 Original line number Diff line number Diff line Loading @@ -16,7 +16,7 @@ requirement field. <requirements> <!-- Container based dependency handling --> <container type="docker">busybox:ubuntu-14.04</container> <container type="docker">busybox:1.36.1-glibc</container> <!-- Conda based dependency handling --> <requirement type="package" version="8.22">gnu_coreutils</requirement> </requirements> Loading lib/galaxy/config/sample/job_conf.sample.yml +4 −4 Original line number Diff line number Diff line Loading @@ -513,13 +513,13 @@ execution: # trust tool's specified container - a destination wide override # can be set. This will cause all jobs on this destination to use # that docker image. #docker_container_id_override: busybox:ubuntu-14.04 #docker_container_id_override: busybox:1.36.1-glibc # Likewise, if deployer wants to use docker for isolation and # does trust tool's specified container - but also wants tool's not # configured to run in a container the following option can provide # a fallback. --> #docker_default_container_id: busybox:ubuntu-14.04 #docker_default_container_id: busybox:1.36.1-glibc # If the destination should be secured to only allow containerized jobs # the following parameter may be set for the job destination. Some tools Loading Loading @@ -633,7 +633,7 @@ execution: - type: docker shell: '/bin/sh' resolve_dependencies: false identifier: 'busybox:ubuntu-14.04' identifier: 'busybox:1.36.1-glibc' - type: singularity shell: '/bin/sh' resolve_dependencies: false Loading @@ -642,7 +642,7 @@ execution: - type: docker shell: '/bin/sh' resolve_dependencies: false identifier: 'busybox:ubuntu-14.04' identifier: 'busybox:1.36.1-glibc' - type: singularity shell: '/bin/sh' resolve_dependencies: false Loading Loading
config/job_conf.yml.interactivetools +2 −2 Original line number Diff line number Diff line Loading @@ -41,8 +41,8 @@ execution: #docker_cmd: /usr/local/custom_docker/docker #docker_host: #docker_container_id_override: busybox:ubuntu-14.04 #docker_default_container_id: busybox:ubuntu-14.04 #docker_container_id_override: busybox:1.36.1-glibc #docker_default_container_id: busybox:1.36.1-glibc #require_container: true #container_monitor: true #container_monitor_result: file Loading
doc/source/admin/jobs.md +1 −1 Original line number Diff line number Diff line Loading @@ -159,7 +159,7 @@ execution: k8s_namespace: default runner: pulsar_k8s docker_enabled: true docker_default_container_id: busybox:ubuntu-14.04 docker_default_container_id: busybox:1.36.1-glibc pulsar_app_config: message_queue_url: 'amqp://guest:guest@host.docker.internal:5672//' local_environment: Loading
doc/source/admin/special_topics/interactivetools.rst +2 −2 Original line number Diff line number Diff line Loading @@ -172,8 +172,8 @@ An example ``job_conf.yml`` file as seen in ``config/job_conf.yml.interactivetoo #docker_cmd: /usr/local/custom_docker/docker #docker_host: #docker_container_id_override: busybox:ubuntu-14.04 #docker_default_container_id: busybox:ubuntu-14.04 #docker_container_id_override: busybox:1.36.1-glibc #docker_default_container_id: busybox:1.36.1-glibc #require_container: true #container_monitor: true #container_monitor_result: file Loading
doc/source/admin/special_topics/mulled_containers.rst +1 −1 Original line number Diff line number Diff line Loading @@ -16,7 +16,7 @@ requirement field. <requirements> <!-- Container based dependency handling --> <container type="docker">busybox:ubuntu-14.04</container> <container type="docker">busybox:1.36.1-glibc</container> <!-- Conda based dependency handling --> <requirement type="package" version="8.22">gnu_coreutils</requirement> </requirements> Loading
lib/galaxy/config/sample/job_conf.sample.yml +4 −4 Original line number Diff line number Diff line Loading @@ -513,13 +513,13 @@ execution: # trust tool's specified container - a destination wide override # can be set. This will cause all jobs on this destination to use # that docker image. #docker_container_id_override: busybox:ubuntu-14.04 #docker_container_id_override: busybox:1.36.1-glibc # Likewise, if deployer wants to use docker for isolation and # does trust tool's specified container - but also wants tool's not # configured to run in a container the following option can provide # a fallback. --> #docker_default_container_id: busybox:ubuntu-14.04 #docker_default_container_id: busybox:1.36.1-glibc # If the destination should be secured to only allow containerized jobs # the following parameter may be set for the job destination. Some tools Loading Loading @@ -633,7 +633,7 @@ execution: - type: docker shell: '/bin/sh' resolve_dependencies: false identifier: 'busybox:ubuntu-14.04' identifier: 'busybox:1.36.1-glibc' - type: singularity shell: '/bin/sh' resolve_dependencies: false Loading @@ -642,7 +642,7 @@ execution: - type: docker shell: '/bin/sh' resolve_dependencies: false identifier: 'busybox:ubuntu-14.04' identifier: 'busybox:1.36.1-glibc' - type: singularity shell: '/bin/sh' resolve_dependencies: false Loading