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add amml_cp2k_convert tool

Yakubov, Sergey requested to merge 41-convert-tool into dev

Closes #41 (closed)

the tool is here. It takes the output of the cp2k tool as input (plus mof.inp) and produces raw files.

I did not add call to raw_to_set.sh in this tool, because

  1. It produces an unspecified amount of folders (depending on nlines_per_set and file sizes) and we cannot describe that as tool output in Galaxy. Would need to archive all sets to a single file and then unarchive
  2. Source code for raw_to_set is part of DeePMD (less important)

So it makes sense to convert raw files right before we do the training, i.e. in the next tool. Please let me know if this is a bad idea for some reason.

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