Add tool XML linting to non-prototype tools

Summary of Changes

Moving the prototype XML linting to the non-prototype tools. The only change is that for non-prototype tools I am removing allow_failure: true to more strictly enforce XML validity.

Checklist

  • The MR has a clear and concise title
  • Code is self-documented and follows style guidelines.
  • Automated tests are written and pass successfully.
  • Regression tests (e.g. manually triggered system tests, manual GUI/tool tests, ...) are performed to make sure the MR does not break anything (when applicable)
  • Readme file is present and up-to-date.

Documentation Updates

Additional Notes

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