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Update tools files

Yakubov, Sergey requested to merge 124-update-tools-files-chemical-spectroscopy into dev

Summary of Changes

Update help sections of all tools to have a standard format. Remove a couple of old tools.

Checklist

  • The MR has a clear and concise title
  • Code is self-documented and follows style guidelines.
  • Automated tests are written and pass successfully.
  • Regression tests (e.g. manually triggered system tests, manual GUI/tool tests, ...) are performed to make sure the MR does not break anything (when applicable)
  • Readme file is present and up-to-date.

Documentation Updates

Additional Notes

I went ahead and modified all tools, not only chemical spectroscopy ones. Still need to modify system tests and the TOPAZ app when MR is merged to take into account changed tool id.

Closes #124 (closed)

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