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NDIP
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!195
Remove refl1d from prototype branch
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Remove refl1d from prototype branch
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Ayres, Andrew
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7 months ago
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tools/neutrons/interactivetool_refl1d.xml deleted
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<tool
id=
"neutrons_reflectometry_refl1d"
tool_type=
"interactive"
name=
"Refl1D"
profile=
"22.05"
version=
"0.1.0-dev"
>
<description></description>
<requirements>
<container
type=
"docker"
shell=
"/bin/bash"
>
code.ornl.gov:4567/ndip/tool-sources/reflectometry/refl1d:0.2.9
</container>
</requirements>
<entry_points>
<entry_point
name=
"Refl1D"
label=
"refl1d"
requires_domain=
"False"
requires_path_in_url=
"True"
>
<port>
8081
</port>
</entry_point>
</entry_points>
<environment_variables>
<environment_variable
name=
"EP_PATH"
inject=
"entry_point_path_for_label"
>
refl1d
</environment_variable>
</environment_variables>
<command
strict=
"false"
>
<![CDATA[
bash /prepare_nginx.sh &&
mkdir -p /data/inputs &&
mkdir -p /data/outputs &&
ln -s /data/outputs ./outputs &&
#for $i, $s in enumerate($datasets)
#set $name = os.path.basename(str($s.input.element_identifier))
ln -sf '${s.input}' '/data/inputs/${name}' &&
#end for
python -m refl1d.webview.server --port 8080 --external --path /data
>
>(tee -a $output_console) 2>
&1;
exit 0
]]>
</command>
<inputs>
<repeat
name=
"datasets"
title=
"Datasets"
>
<param
name=
"input"
type=
"data"
label=
"Dataset"
/>
</repeat>
</inputs>
<outputs>
<collection
type=
"list"
name=
"output"
label=
"Refl1D Output Files"
>
<discover_datasets
pattern=
"__designation__"
directory=
"outputs"
/>
</collection>
<data
name=
"output_console"
auto_format=
"true"
label=
"Ref1D Console Output"
/>
</outputs>
<help>
1-D reflectometry allows material scientists to understand the structure of thin films, providing composition and
density information as a function of depth. With polarized neutron measurements, scientists can study the sub-surface
structure of magnetic samples. The Refl1D modeling program supports a mixture of slabs, freeform and specialized layer
types such as models for the density distribution of polymer brushes. More information on Refl1D can be found at
https://refl1d.readthedocs.io/en/latest/index.html
Any tool input files will be made available in the /data/inputs directory. Any files placed in the /data/outputs
directory will be returned to the history in a dataset collection when the tool finishes.
</help>
</tool>
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