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Application structure

DeWitt, Stephen requested to merge 71d/mmmm:applications into master

I added a new 'applications' directory. My thought is that each MEUMAPPS application is in there. The main application that we'll be working on is the 'precipitation_generalized' application. However, I expect that over time we'll want some others. I've included my bare bones Allen-Cahn code as a separate application.

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