Unverified Commit 2107f7de authored by Robert Scott's avatar Robert Scott Committed by GitHub
Browse files

Merge pull request #225865 from bzizou/samtools 

samtools: 1.13 -> 1.17
parents 46d97242 d69d242b

pkgs/applications/science/biology/samtools/default.nix

+2 −11
Original line number Diff line number Diff line
@@ -2,22 +2,13 @@ 


stdenv.mkDerivation rec {

  pname = "samtools";

  version = "1.13";

  version = "1.17";



  src = fetchurl {

    url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2";

    sha256 = "sha256-YWyi4FHMgAmh6cAc/Yx8r4twkW3f9m87dpFAeUZfjGA=";

    sha256 = "sha256-Ot85C2KCGf1kCPFGAqTEqpDmPhizldrXIqtRlDiipyk";

  };



  patches = [

    # Pull upstream patch for ncurses-6.3 support

    (fetchpatch {

      name = "ncurses-6.3.patch";

      url = "https://github.com/samtools/samtools/commit/396ef20eb0854d6b223c3223b60bb7efe42301f7.patch";

      sha256 = "sha256-p0l9ymXK9nqL2w8EytbW+qeaI7dD86IQgIVxacBj838=";

    })

  ];



  # tests require `bgzip` from the htslib package

  nativeCheckInputs = [ htslib ];

pkgs/development/libraries/science/biology/htslib/default.nix

+2 −2
Original line number Diff line number Diff line
@@ -2,11 +2,11 @@ 


stdenv.mkDerivation rec {

  pname = "htslib";

  version = "1.16";

  version = "1.17";



  src = fetchurl {

    url = "https://github.com/samtools/htslib/releases/download/${version}/${pname}-${version}.tar.bz2";

    sha256 = "sha256-YGt8ev9zc0zwM+zRVvQFKfpXkvVFJJUqKJOMoIkNeSQ=";

    sha256 = "sha256-djd5KIxA8HZG7HrZi5bDeMc5Fx0WKtmDmIaHg7chg58";

  };



  # perl is only used during the check phase.