Commit d69d242b authored by Bruno Bzeznik's avatar Bruno Bzeznik
Browse files

Samtools: 1.13 -> 1.17 

Changelogs:
 - https://github.com/samtools/samtools/releases/tag/1.14
 - https://github.com/samtools/samtools/releases/tag/1.15
 - https://github.com/samtools/samtools/releases/tag/1.15.1
 - https://github.com/samtools/samtools/releases/tag/1.16
 - https://github.com/samtools/samtools/releases/tag/1.16.1
 - https://github.com/samtools/samtools/releases/tag/1.17
parent e7c85757

pkgs/applications/science/biology/samtools/default.nix

+2 −11
Original line number Diff line number Diff line
@@ -2,22 +2,13 @@ 


stdenv.mkDerivation rec {

  pname = "samtools";

  version = "1.13";

  version = "1.17";



  src = fetchurl {

    url = "https://github.com/samtools/samtools/releases/download/${version}/${pname}-${version}.tar.bz2";

    sha256 = "sha256-YWyi4FHMgAmh6cAc/Yx8r4twkW3f9m87dpFAeUZfjGA=";

    sha256 = "sha256-Ot85C2KCGf1kCPFGAqTEqpDmPhizldrXIqtRlDiipyk";

  };



  patches = [

    # Pull upstream patch for ncurses-6.3 support

    (fetchpatch {

      name = "ncurses-6.3.patch";

      url = "https://github.com/samtools/samtools/commit/396ef20eb0854d6b223c3223b60bb7efe42301f7.patch";

      sha256 = "sha256-p0l9ymXK9nqL2w8EytbW+qeaI7dD86IQgIVxacBj838=";

    })

  ];



  # tests require `bgzip` from the htslib package

  nativeCheckInputs = [ htslib ];