Signed-off-by: Karl Palmen <karl.palmen@stfc.ac.uk>

Graph is not actually plotted by the script, but its workspace is saved to enable plotting after running the script.
Signed-off-by: Karl Palmen <karl.palmen@stfc.ac.uk>

Previously calibration would stop if a tube were found for which the spectra could not be obtained. Now it skips that tube a calibrates subsequent tubes.

Signed-off-by: Karl Palmen <karl.palmen@stfc.ac.uk>

Also first step towards handling tubes of arbitrary orientation.

Signed-off-by: Karl Palmen <karl.palmen@stfc.ac.uk>

Signed-off-by: Karl Palmen <karl.palmen@stfc.ac.uk>

Re #6160.

Re #6160.

Also reduced the cross-hair size by 0.6.

Conflicts resolved:
	Code/Mantid/instrument/IN5_Definition.xml

Refs #6486

The problem looked to be due to the fact that the Intel compiler
evaluates function arguments L->R (out other compilers do it R->L). If
the LHS & output workspaces were the same one, the references obtained
by the readY/E calls could be invalidated by other threads, whereas
with R->L evaluation the dataY/E calls would have ensured the readY/E
gave the right one.
In fact, the tests that showed this up are rather artificial as it's
extremely unlikely that data will be shared between Y & E vectors
(unlike X vectors), but it's better to make sure it's correct.

re #6175

re #6175

re #6175

re #6175

It must create the config file if there is no config file.

re #6175

This reverts commit 88de8fcf.

This is required for the archive search within the FileFinder.
Although it uses ICAT underneath, it is unrelated to the Catalog menu.

The warning message is not true, because the update has been done trough
another instance of the script repository, but will make the user worry,
so remove it.

re #6175

the short cut was only for giving me a faster way to test...

re #6175

Change only strings for giving the user a better description of the
Script Repository Installation process.

re #6175

re #6175

The update is done by the ScriptRepositoryView.

re #6175

If the user (could not wait for the installation) and canceled
the installation process, the folder for the scriptRepository may
be created, but the references and indexes are not valid. Further
attempt to use this repository may cause a segmentation fault.

Checking if the repository is empty help to prevent such case.

re #6175

There was the suggestion to try to install first the git transport and
them the http transport. This changeset implement this.

re #6175

GUI has a cleaner look; it is more consistent across most of the tabs.

Also improve log message on the login algorithm.

re #6175

re #6175

re #6175

make the installation more friendly.

re #6175

This should reduce the number of warnings.

re #6175

re #6175