Pull in the system test code and tests

Fix broken indirect interfaces

Parameter name change. re #10987

Modified the property TimeInterval of GenerateEventsFilter.

General sample transmission UI

Move to cmake 2.8.12

Fix coverity issues in MantidPlot's PlotDialog

Conflicts:
	Code/Mantid/Build/Jenkins/buildscript
Refs #10870

Fix Doxygen warnings in PreviewPlot and corrected some typing errors in the comments.

Allow some functions of log value

Fix coverity issues in MantidPlot's Graph

Refs #11168

Fixing doxygen errors in PeakFunctionIntegrator

Refs #11034 workspaces for principal axes lengths

Refs #11168

Refs #11166

Search for first/last run in the other directory

Adding enviroment variable for qt_api to launch script

Fixes for OpenCascade 6.8.0

Mantid/Kernel gitignore

Fix StartLiveData doc test.

Replace help link in README.md

Conflicts:
	Code/Mantid/Framework/PythonInterface/plugins/algorithms/CalculateSampleTransmission.py

Refs #11072

Merge pull request #278 from mantidproject/11061_coverity_issues_framework_memory_initialization_etc

Fix initialization etc. coverity issues in Framework

Various PyLint fixes in scripts folder

Will keep an eye on systemtets

Declare Python member variables in algorithms

Parse Poco version and make available in header file

Improve confidence method in LoadMcStas by using descriptor - improved use of descriptor making code simpler and faster.

Refs #11144