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#include <iostream>
#include <iomanip>
#include <fstream>
#include <sstream>
#include <cmath>
#include <vector>
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#include <string.h>
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#include "MantidKernel/Strings.h"
#include <iosfwd>
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using std::size_t;
namespace Mantid
{
namespace Kernel
{
namespace Strings
{
//------------------------------------------------------------------------------------------------
/** Return a string with all matching occurence-strings
*
* @param input :: input string
* @param find_what :: will search for all occurences of this string
* @param replace_with :: ... and replace them with this.
* @return the modified string.
*/
std::string replace(const std::string input, const std::string find_what, const std::string replace_with)
{
std::string output = input;
std::string::size_type pos=0;
while((pos=output.find(find_what, pos))!=std::string::npos)
{
output.erase(pos, find_what.length());
output.insert(pos, replace_with);
pos+=replace_with.length();
}
return output;
}
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//------------------------------------------------------------------------------------------------
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/**
Function to convert a number into hex
output (and leave the stream un-changed)
@param OFS :: Output stream
@param n :: Integer to convert
\todo Change this to a stream operator
*/
void printHex(std::ostream& OFS,const int n)
{
std::ios_base::fmtflags PrevFlags=OFS.flags();
OFS<<"Ox";
OFS.width(8);
OFS.fill('0');
hex(OFS);
OFS << n;
OFS.flags(PrevFlags);
return;
}
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//------------------------------------------------------------------------------------------------
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/**
Removes the multiple spaces in the line
@param Line :: Line to process
@return String with single space components
*/
std::string stripMultSpc(const std::string& Line)
{
std::string Out;
int spc(1);
int lastReal(-1);
for(unsigned int i=0;i<Line.length();i++)
{
if (Line[i]!=' ' && Line[i]!='\t' &&
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{
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else if (!spc)
{
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}
lastReal++;
if (lastReal<static_cast<int>(Out.length()))
Out.erase(lastReal);
return Out;
}
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//------------------------------------------------------------------------------------------------
//------------------------------------------------------------------------------------------------
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/**
Checks that as least cnt letters of
works is part of the string. It is currently
case sensitive. It removes the Word if found
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@param Line :: Line to process
@param Word :: Word to use
@param cnt :: Length of Word for significants [default =4]
@retval 1 on success (and changed Line)
@retval 0 on failure
*/
int extractWord(std::string& Line,const std::string& Word,const int cnt)
{
if (Word.empty())
return 0;
size_t minSize(cnt>static_cast<int>(Word.size()) ? Word.size() : cnt);
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std::string::size_type pos=Line.find(Word.substr(0,minSize));
if (pos==std::string::npos)
return 0;
// Pos == Start of find
size_t LinePt=minSize+pos;
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for(;minSize<Word.size() && LinePt<Line.size()
&& Word[minSize]==Line[LinePt];LinePt++,minSize++)
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{
}
Line.erase(pos,LinePt-(pos-1));
return 1;
}
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//------------------------------------------------------------------------------------------------
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/**
Check to see if S is the same as the
first part of a phrase. (case insensitive)
@param S :: string to check
@param fullPhrase :: complete phrase
@return 1 on success
*/
int confirmStr(const std::string& S,const std::string& fullPhrase)
{
const size_t nS(S.length());
const size_t nC(fullPhrase.length());
if (nS>nC || nS<=0)
return 0;
for(size_t i=0;i<nS;i++)
if (S[i]!=fullPhrase[i])
return 0;
return 1;
}
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//------------------------------------------------------------------------------------------------
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/**
Gets a line and determine if there is addition component to add
in the case of a very long line.
@param fh :: input stream to get line
@param Out :: string up to last 'tab' or ' '
@param Excess :: string after 'tab or ' '
@param spc :: number of char to try to read
@retval 1 :: more line to be found
@retval -1 :: Error with file
@retval 0 :: line finished.
*/
int getPartLine(std::istream& fh,std::string& Out,std::string& Excess,const int spc)
{
std::string Line;
if (fh.good())
{
char* ss=new char[spc+1];
const int clen = static_cast<int>(spc-Out.length());
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fh.getline(ss,clen,'\n');
ss[clen+1]=0; // incase line failed to read completely
Out+=static_cast<std::string>(ss);
delete [] ss;
// remove trailing comments
std::string::size_type pos = Out.find_first_of("#!");
if (pos!=std::string::npos)
{
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if (fh.gcount()==clen-1) // cont line
{
pos=Out.find_last_of("\t ");
if (pos!=std::string::npos)
{
Excess=Out.substr(pos,std::string::npos);
Out.erase(pos);
}
else
Excess.erase(0,std::string::npos);
fh.clear();
return 1;
}
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return 0;
}
return -1;
}
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//------------------------------------------------------------------------------------------------
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/**
Removes all spaces from a string
except those with in the form '\ '
@param CLine :: Line to strip
@return String without space
*/
std::string removeSpace(const std::string& CLine)
{
std::string Out;
char prev='x';
for(unsigned int i=0;i<CLine.length();i++)
{
if (!isspace(CLine[i]) || prev=='\\')
{
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}
return Out;
}
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//------------------------------------------------------------------------------------------------
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/**
Reads a line from the stream of max length spc.
Trailing comments are removed. (with # or ! character)
@param fh :: already open file handle
@param spc :: max number of characters to read
@return String read.
*/
std::string getLine(std::istream& fh,const int spc)
{
char* ss=new char[spc+1];
std::string Line;
if (fh.good())
{
fh.getline(ss,spc,'\n');
ss[spc]=0; // incase line failed to read completely
Line=ss;
// remove trailing comments
std::string::size_type pos = Line.find_first_of("#!");
if (pos!=std::string::npos)
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}
delete [] ss;
return Line;
}
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//------------------------------------------------------------------------------------------------
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/**
Determines if a string is only spaces
@param A :: string to check
@return 1 on an empty string , 0 on failure
*/
int isEmpty(const std::string& A)
{
std::string::size_type pos=
A.find_first_not_of(" \t");
return (pos!=std::string::npos) ? 0 : 1;
}
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//------------------------------------------------------------------------------------------------
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/**
removes the string after the comment type of
'$ ' or '!' or '# '
@param A :: String to process
*/
void stripComment(std::string& A)
{
std::string::size_type posA=A.find("$ ");
std::string::size_type posB=A.find("# ");
std::string::size_type posC=A.find("!");
if (posA>posB)
posA=posB;
if (posA>posC)
posA=posC;
if (posA!=std::string::npos)
A.erase(posA,std::string::npos);
return;
}
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//------------------------------------------------------------------------------------------------
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/**
Returns the string from the first non-space to the
last non-space
@param A :: string to process
@return shortened string
*/
std::string fullBlock(const std::string& A)
{
return strip(A);
}
//------------------------------------------------------------------------------------------------
/** Returns the string from the first non-space to the
last non-space
@param A :: string to process
@return shortened string
*/
std::string strip(const std::string& A)
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{
std::string::size_type posA=A.find_first_not_of(" ");
std::string::size_type posB=A.find_last_not_of(" ");
if (posA==std::string::npos)
return "";
return A.substr(posA,1+posB-posA);
}
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//------------------------------------------------------------------------------------------------
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/**
Write out the line in the limited form for MCNPX
ie initial line from 0->72 after that 8 to 72
(split on a space or comma)
@param Line :: full MCNPX line
@param OX :: ostream to write to
*/
void writeMCNPX(const std::string& Line,std::ostream& OX)
{
const int MaxLine(72);
std::string::size_type pos(0);
std::string X=Line.substr(0,MaxLine);
std::string::size_type posB=X.find_last_of(" ,");
int spc(0);
while (posB!=std::string::npos &&
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{
pos+=posB+1;
if (!isspace(X[posB]))
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const std::string Out=X.substr(0,posB);
if (!isEmpty(Out))
{
if (spc)
OX<<std::string(spc,' ');
OX<<X.substr(0,posB)<<std::endl;
}
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spc=8;
X=Line.substr(pos,MaxLine-spc);
posB=X.find_last_of(" ,");
}
if (!isEmpty(X))
{
if (spc)
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OX<<X<<std::endl;
}
return;
}
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//------------------------------------------------------------------------------------------------
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/**
Splits the sting into parts that are space delminated.
@param Ln :: line component to strip
@return vector of components
*/
std::vector<std::string> StrParts(std::string Ln)
{
std::vector<std::string> Out;
std::string Part;
while(section(Ln,Part))
Out.push_back(Part);
return Out;
}
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//------------------------------------------------------------------------------------------------
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/**
Converts a vax number into a standard unix number
@param A :: float number as read from a VAX file
@return float A in IEEE little eindian format
*/
float getVAXnum(const float A)
{
union
{
char a[4];
float f;
int ival;
} Bd;
int sign,expt,fmask;
float frac;
double onum;
Bd.f=A;
sign = (Bd.ival & 0x8000) ? -1 : 1;
expt = ((Bd.ival & 0x7f80) >> 7); //reveresed ?
if (!expt)
return 0.0;
fmask = ((Bd.ival & 0x7f) << 16) | ((Bd.ival & 0xffff0000) >> 16);
expt-=128;
fmask |= 0x800000;
frac = (float) fmask / 0x1000000;
onum = frac * static_cast<float>(sign) * pow(2.0,expt);
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return (float) onum;
}
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//------------------------------------------------------------------------------------------------
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/**
Takes a character string and evaluates
the first [typename T] object. The string is then
erase upt to the end of number.
The diffierence between this and section is that
it allows trailing characters after the number.
@param out :: place for output
@param A :: string to process
@return 1 on success 0 on failure
*/
template<typename T>
int sectPartNum(std::string& A,T& out)
{
if (A.empty())
return 0;
std::istringstream cx;
T retval;
cx.str(A);
cx.clear();
cx>>retval;
const std::streamoff xpt = cx.tellg();
if (xpt < 0)
return 0;
A.erase(0,static_cast<unsigned int>(xpt));
out=retval;
return 1;
}
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//------------------------------------------------------------------------------------------------
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/**
Takes a character string and evaluates
the first [typename T] object. The string is then filled with
spaces upto the end of the [typename T] object
@param out :: place for output
@param cA :: char array for input and output.
@return 1 on success 0 on failure
*/
template<typename T>
int section(char* cA,T& out)
{
if (!cA) return 0;
std::string sA(cA);
const int item(section(sA,out));
if (item)
{
strcpy(cA,sA.c_str());
return 1;
}
return 0;
}
/*
takes a character string and evaluates
the first <T> object. The string is then filled with
spaces upto the end of the <T> object
@param out :: place for output
@param A :: string for input and output.
@return 1 on success 0 on failure
*/
template<typename T>
int section(std::string& A,T& out)
{
if (A.empty()) return 0;
std::istringstream cx;
T retval;
cx.str(A);
cx.clear();
cx>>retval;
if (cx.fail())
return 0;
const std::streamoff xpt = cx.tellg();
const char xc = static_cast<char>(cx.get());
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if (!cx.fail() && !isspace(xc))
return 0;
A.erase(0, static_cast<unsigned int>(xpt));
out=retval;
return 1;
}
/*
Takes a character string and evaluates
the first [T] object. The string is then filled with
spaces upto the end of the [T] object.
This version deals with MCNPX numbers. Those
are numbers that are crushed together like
- 5.4938e+04-3.32923e-6
@param out :: place for output
@param A :: string for input and output.
@return 1 on success 0 on failure
*/
template<typename T>
int sectionMCNPX(std::string& A,T& out)
{
if (A.empty()) return 0;
std::istringstream cx;
T retval;
cx.str(A);
cx.clear();
cx>>retval;
if (!cx.fail())
{
const std::streamoff xpt = cx.tellg();
if( xpt < 0 )
{
return 0;
}
const char xc=static_cast<char>(cx.get());
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if (!cx.fail() && !isspace(xc) && (xc!='-' || xpt<5))
{
return 0;
}
A.erase(0, static_cast<unsigned int>(xpt));
out=retval;
return 1;
}
return 0;
}
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//------------------------------------------------------------------------------------------------
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/**
Takes a character string and evaluates
the first [typename T] object. The string is then
erase upto the end of number.
The diffierence between this and convert is that
it allows trailing characters after the number.
@param out :: place for output
@param A :: string to process
@retval number of char read on success
@retval 0 on failure
*/
template<typename T>
int convPartNum(const std::string& A,T& out)
{
if (A.empty()) return 0;
std::istringstream cx;
T retval;
cx.str(A);
cx.clear();
cx>>retval;
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// If we have reached the end of the stream, then we need to clear the error as
// it will cause the tellg() call to return -1. Not pretty but works for now.
cx.clear();
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const std::streamoff xpt = cx.tellg();
if (xpt<0)
return 0;
out=retval;
return static_cast<int>(xpt);
}
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//------------------------------------------------------------------------------------------------
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/**
Convert a string into a value
@param A :: string to pass
@param out :: value if found
@return 0 on failure 1 on success
*/
template<typename T>
int convert(const std::string& A,T& out)
{
if (A.empty()) return 0;
std::istringstream cx;
T retval;
cx.str(A);
cx.clear();
cx>>retval;
if (cx.fail())
return 0;
const char clast = static_cast<char>(cx.get());
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if (!cx.fail() && !isspace(clast))
return 0;
out=retval;
return 1;
}
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//------------------------------------------------------------------------------------------------
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/**
Convert a string into a value
@param A :: string to pass
@param out :: value if found
@return 0 on failure 1 on success
*/
template<typename T>
int convert(const char* A,T& out)
{
// No string, no conversion
if (!A) return 0;
std::string Cx=A;
return convert(Cx,out);
}
//------------------------------------------------------------------------------------------------
/** Convert a number or other value to a string
*
* @param value :: templated value (e.g. a double) to convert
* @return a string
*/
template<typename T>
std::string toString(const T value)
{
std::ostringstream mess;
mess << value;
return mess.str();
}
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//------------------------------------------------------------------------------------------------
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/**
Write out the three vectors into a file of type dc 9
@param step :: parameter to control x-step (starts from zero)
@param Y :: Y column
@param Fname :: Name of the file
@return 0 on success and -ve on failure
*/
template<template<typename T,typename A> class V,typename T,typename A>
int writeFile(const std::string& Fname,const T step, const V<T,A>& Y)
{
V<T,A> Ex; // Empty vector
V<T,A> X; // Empty vector
for(unsigned int i=0;i<Y.size();i++)
X.push_back(i*step);
return writeFile(Fname,X,Y,Ex);
}
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//------------------------------------------------------------------------------------------------
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/**
Write out the three vectors into a file of type dc 9
@param X :: X column
@param Y :: Y column
@param Fname :: Name of the file
@return 0 on success and -ve on failure
*/
template<template<typename T,typename A> class V,typename T,typename A>
int writeFile(const std::string& Fname,const V<T,A>& X,const V<T,A>& Y)
{
V<T,A> Ex; // Empty vector/list
return writeFile(Fname,X,Y,Ex); // don't need to specific ??
}
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//------------------------------------------------------------------------------------------------
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/**
Write out the three container into a file with
column free-formated data in the form :
- X Y Err
If Err does not exist (or is short) 0.0 is substituted.
@param X :: X column
@param Y :: Y column
@param Err :: Err column
@param Fname :: Name of the file
@return 0 on success and -ve on failure
*/
template<template<typename T,typename A> class V,typename T,typename A>
int writeFile(const std::string& Fname,const V<T,A>& X,const V<T,A>& Y,const V<T,A>& Err)
{
const size_t Npts(X.size()>Y.size() ? Y.size() : X.size());
const size_t Epts(Npts > Err.size() ? Err.size() : Npts);
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std::ofstream FX;
FX.open(Fname.c_str());
if (!FX.good())
return -1;
FX<<"# "<<Npts<<" "<<Epts<<std::endl;
FX.precision(10);
FX.setf(std::ios::scientific,std::ios::floatfield);
typename V<T,A>::const_iterator xPt=X.begin();
typename V<T,A>::const_iterator yPt=Y.begin();
typename V<T,A>::const_iterator ePt=(Epts ? Err.begin() : Y.begin());
// Double loop to include/exclude a short error stack
size_t eCount=0;
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for(;eCount<Epts;eCount++)
{
FX<<(*xPt)<<" "<<(*yPt)<<" "<<(*ePt)<<std::endl;
xPt++;
yPt++;
ePt++;
}
for(;eCount<Npts;eCount++)
{
FX<<(*xPt)<<" "<<(*yPt)<<" 0.0"<<std::endl;
xPt++;
yPt++;
}
FX.close();
return 0;
}
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//------------------------------------------------------------------------------------------------
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/**
Call to read in various values in position x1,x2,x3 from the
line. Note to avoid the dependency on crossSort this needs
to be call IN ORDER
@param Line :: string to read
@param Index :: Indexes to read
@param Out :: OutValues [unchanged if not read]
@retval 0 :: success
@retval -ve on failure.
*/
template<typename T>
int setValues(const std::string& Line,const std::vector<int>& Index,std::vector<T>& Out)
{
if (Index.empty())
return 0;
if(Out.size()!=Index.size())
return -1;
// throw ColErr::MisMatch<int>(Index.size(),Out.size(),
// "Mantid::Kernel::Strings::setValues");
std::string modLine=Line;
std::vector<int> sIndex(Index); // Copy for sorting
std::vector<int> OPt(Index.size());
for(unsigned int i=0;i<Index.size();i++)
OPt[i]=i;
// mathFunc::crossSort(sIndex,OPt);
typedef std::vector<int>::const_iterator iVecIter;
std::vector<int>::const_iterator sc=sIndex.begin();
std::vector<int>::const_iterator oc=OPt.begin();
int cnt(0);
T value;
std::string dump;
while(sc!=sIndex.end() && *sc<0)
{
sc++;
oc++;
}
while(sc!=sIndex.end())
{
if (*sc==cnt)
{
if (!section(modLine,value))
return static_cast<int>(-1-distance(static_cast<iVecIter>(sIndex.begin()),sc));
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// this loop handles repeat units
do
{
Out[*oc]=value;
sc++;
oc++;
} while (sc!=sIndex.end() && *sc==cnt);
}
else
{
if (!section(modLine,dump))
return static_cast<int>(-1-distance(static_cast<iVecIter>(sIndex.begin()),sc));
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}
cnt++; // Add only to cnt [sc/oc in while loop]
}
// Success since loop only gets here if sc is exhaused.
return 0;
}
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//-----------------------------------------------------------------------------------------------
/** Get a word from a line and strips spaces
*
* @param in :: stream input
* @param consumeEOL :: set to true to remove the new lines at the end of the line
* @return a string with the word read in
*/
std::string getWord( std::ifstream &in , bool consumeEOL )
{
std::string s;
char c = 0;
if( in.good() )
for( c = static_cast<char>(in.get()) ; c == ' ' && in.good() ; c = static_cast<char>(in.get()) )
{}
else
return std::string();
if( c == '\n' )
{
if( !consumeEOL )
in.putback( c );
return std::string();
}
s.push_back( c );
if( in.good() )
for( c = static_cast<char>(in.get()) ; in.good()&&c != ' ' && c != '\n' && c != '\r' ; c = static_cast<char>(in.get()) )
s.push_back( c );
if( ((c == '\n') || (c == '\r')) && !consumeEOL )
in.putback( c );
return s;
}
//-----------------------------------------------------------------------------------------------
/** Read up to the eol
*
* @param in :: stream input
* @param consumeEOL :: set to true to remove the new lines at the end of the line
*/
void readToEndOfLine( std::ifstream& in , bool ConsumeEOL )
{
while( in.good() && getWord( in , false ).length() > 0 )
getWord( in , false );
if( !ConsumeEOL )
return ;
getWord( in , true );
}
/** function parses a path, placed into input string "path" and returns vector of the folders contributed into the path
* @param in :: path -- the string containing input path,
found in path string, if they are separated by \ or / symbols.
Treats special symbols, if defined in the input string as path-es
returns 0 for empty input string
used to genrate path in hdf file, so the resulting path has to obey hdf constrains;
*/
size_t split_path(const std::string &path, std::vector<std::string> &path_components)
{
if(path.empty()){
path_components.resize(0);
return 0;
}
// convert Windows path into the unix one
std::string working_path(path);
for(size_t i=0;i<path.size();i++){
if(working_path[i]<0x20||working_path[i]>0x7E)working_path[i]='_';
if(working_path[i]=='\\')working_path[i]='/';
if(working_path[i]==' ')working_path[i]='_';
}
// path start with relative character, and we need to convert it into full path
if(path[0]=='.'){
// get absolute path using working directory as base;
Poco::Path absol;
absol = absol.absolute();
working_path = absol.toString(Poco::Path::PATH_UNIX)+working_path;
}
// as poco splt using regular expressions is doing some rubbish, we need to do split manually
// code below implements perl split(/\\//,string) commamd. (\\ has been converted to / above)
std::list<int64_t> split_pos;
split_pos.push_back(-1);
size_t path_size = working_path.size();
for(size_t i=0;i<path_size;i++){
if(working_path[i]=='/'){
split_pos.push_back(i);
}
}
split_pos.push_back(path_size);
// allocate target vector to keep folder structure and fill it in
size_t n_folders = split_pos.size()-1;
path_components.resize(n_folders);
std::list<int64_t>::iterator it1 = split_pos.begin();
std::list<int64_t>::iterator it2 = it1;
for(; it2!=split_pos.end();++it2){
std::string folder = working_path.substr(*it1+1,*it2-*it1-1);
if(folder.empty()||(folder.size()==1&&folder==".")){ // skip self-references and double slashes;
it1=it2;
continue;
}
// reprocess up-references;
if(folder==".."){
if(folder.size()!=2)throw(std::invalid_argument("path contains wrong path group"));
ic--;
if(ic<0)throw(std::invalid_argument("path contains relative references to a folder outside of the seach tree"));
it1=it2;
continue;
}
path_components[ic]=folder;
ic++;
it1=it2;
}
n_folders=size_t(ic);
path_components.resize(n_folders);
return n_folders;
Janik Zikovsky
committed
/// \cond TEMPLATE
template DLLExport int section(std::string&,double&);
template DLLExport int section(std::string&,float&);
template DLLExport int section(std::string&,int&);
template DLLExport int section(std::string&,std::string&);
//template DLLExport int section(std::string&, Mantid::Geometry::V3D&);
template DLLExport int sectPartNum(std::string&,double&);
template DLLExport int sectPartNum(std::string&,int&);
template DLLExport int sectionMCNPX(std::string&,double&);
template DLLExport int convert(const std::string&,double&);
template DLLExport int convert(const std::string&,std::string&);
template DLLExport int convert(const std::string&,int&);
template DLLExport int convert(const std::string&,std::size_t&);
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template DLLExport int convert(const char*,std::string&);
template DLLExport int convert(const char*,double&);
template DLLExport int convert(const char*,int&);
Janik Zikovsky
committed
template DLLExport std::string toString(const double value);
template DLLExport std::string toString(const int value);
template DLLExport std::string toString(const uint16_t value);
template DLLExport std::string toString(const size_t value);
Janik Zikovsky
committed
template DLLExport int convPartNum(const std::string&,double&);
template DLLExport int convPartNum(const std::string&,int&);
template DLLExport int setValues(const std::string&,const std::vector<int>&,std::vector<double>&);
template DLLExport int writeFile(const std::string&,const double,const std::vector<double>&);
template DLLExport int writeFile(const std::string&,const std::vector<double>&,const std::vector<double>&,const std::vector<double>&);
template DLLExport int writeFile(const std::string&,const std::vector<double>&,const std::vector<double>&);
template DLLExport int writeFile(const std::string&,const std::vector<float>&,const std::vector<float>&);
template DLLExport int writeFile(const std::string&,const std::vector<float>&,const std::vector<float>&,const std::vector<float>&);
/// \endcond TEMPLATE
} // NAMESPACE Strings
} // Namespace Kernel
} // NAMESPACE Mantid