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#ifndef MANTID_MDALGORITHMS_LOADMDEWTEST_H_
#define MANTID_MDALGORITHMS_LOADMDEWTEST_H_
#include "MantidAPI/IMDEventWorkspace.h"
#include "MantidKernel/CPUTimer.h"
#include "MantidKernel/System.h"
#include "MantidKernel/Timer.h"
#include "MantidMDEvents/MDBox.h"
#include "MantidMDEvents/MDGridBox.h"
#include "MantidMDEvents/MDEventFactory.h"
#include "MantidMDEvents/MDEventWorkspace.h"
#include "SaveMDTest.h"
#include <cxxtest/TestSuite.h>
#include <iomanip>
#include <iostream>
#include "MantidAPI/ExperimentInfo.h"
#include "MantidMDAlgorithms/LoadMD.h"
using namespace Mantid;
using namespace Mantid::MDEvents;
using namespace Mantid::MDAlgorithms;
using namespace Mantid::API;
using namespace Mantid::Kernel;
class LoadMDTest : public CxxTest::TestSuite
{
public:
void test_Init()
{
LoadMD alg;
TS_ASSERT_THROWS_NOTHING( alg.initialize() )
TS_ASSERT( alg.isInitialized() )
}
/// Compare two box controllers and assert each part of them.
static void compareBoxControllers(BoxController & a, BoxController & b)
{
TS_ASSERT_EQUALS( a.getNDims(), b.getNDims());
TS_ASSERT_EQUALS( a.getMaxDepth(), b.getMaxDepth());
TS_ASSERT_EQUALS( a.getMaxId(), b.getMaxId());
TS_ASSERT_EQUALS( a.getSplitThreshold(), b.getSplitThreshold());
TS_ASSERT_EQUALS( a.getNumMDBoxes(), b.getNumMDBoxes());
TS_ASSERT_EQUALS( a.getNumSplit(), b.getNumSplit());
TS_ASSERT_EQUALS( a.getMaxNumMDBoxes(), b.getMaxNumMDBoxes());
for (size_t d=0; d< a.getNDims(); d++)
{
TS_ASSERT_EQUALS( a.getSplitInto(d), b.getSplitInto(d));
}
}
//=================================================================================================================
/** Compare two MDEventWorkspaces
*
* @param ws :: workspace to check
* @param ws1 :: reference workspace
* @param BoxStructureOnly :: true if you only compare the box structure and ignore differences in event lists
*/
template<typename MDE, size_t nd>
static void do_compare_MDEW(boost::shared_ptr<MDEventWorkspace<MDE,nd> > ws1,
boost::shared_ptr<MDEventWorkspace<MDE,nd> > ws2,
bool BoxStructureOnly = false)
{
TS_ASSERT(ws1->getBox());
// Compare the initial to the final workspace
TS_ASSERT_EQUALS(ws1->getBox()->getNumChildren(), ws2->getBox()->getNumChildren());
if (!BoxStructureOnly)
{ TS_ASSERT_EQUALS(ws1->getNPoints(), ws2->getNPoints()); }
TS_ASSERT_EQUALS(ws1->getBoxController()->getMaxId(), ws2->getBoxController()->getMaxId());
// Compare all the details of the box1 controllers
compareBoxControllers(*ws1->getBoxController(), *ws2->getBoxController());
// Compare every box1
std::vector<MDBoxBase<MDE,nd>*> boxes;
std::vector<MDBoxBase<MDE,nd>*> boxes1;
ws1->getBox()->getBoxes(boxes, 1000, false);
ws2->getBox()->getBoxes(boxes1, 1000, false);
TS_ASSERT_EQUALS( boxes.size(), boxes1.size());
if (boxes.size() != boxes1.size()) return;
for (size_t j=0; j<boxes.size(); j++)
{
MDBoxBase<MDE,nd>* box1 = boxes[j];
MDBoxBase<MDE,nd>* box2 = boxes1[j];
TS_ASSERT_EQUALS( box1->getId(), box2->getId() );
TS_ASSERT_EQUALS( box1->getDepth(), box2->getDepth() );
TS_ASSERT_EQUALS( box1->getNumChildren(), box2->getNumChildren() );
for (size_t i=0; i<box1->getNumChildren(); i++)
{
TS_ASSERT_EQUALS( box1->getChild(i)->getId(), box2->getChild(i)->getId() );
}
for (size_t d=0; d<nd; d++)
{
TS_ASSERT_DELTA( box1->getExtents(d).getMin(), box2->getExtents(d).getMin(), 1e-5);
TS_ASSERT_DELTA( box1->getExtents(d).getMax(), box2->getExtents(d).getMax(), 1e-5);
TS_ASSERT_DELTA( box1->getVolume(), box2->getVolume(), 1e-3);
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if (!BoxStructureOnly)
{
TS_ASSERT_DELTA( box1->getSignal(), box2->getSignal(), 1e-3);
TS_ASSERT_DELTA( box1->getErrorSquared(), box2->getErrorSquared(), 1e-3);
TS_ASSERT_EQUALS( box1->getNPoints(), box2->getNPoints() );
}
TS_ASSERT( box1->getBoxController() );
TS_ASSERT( box1->getBoxController()==ws1->getBoxController() );
// Are both MDGridBoxes ?
MDGridBox<MDE,nd>* gridbox1 = dynamic_cast<MDGridBox<MDE,nd>*>(box1);
MDGridBox<MDE,nd>* gridbox2 = dynamic_cast<MDGridBox<MDE,nd>*>(box2);
if (gridbox1)
{
for (size_t d=0; d<nd; d++)
{
TS_ASSERT_DELTA( gridbox1->getBoxSize(d), gridbox2->getBoxSize(d), 1e-4);
}
}
// Are both MDBoxes (with events)
MDBox<MDE,nd>* mdbox1 = dynamic_cast<MDBox<MDE,nd>*>(box1);
MDBox<MDE,nd>* mdbox2 = dynamic_cast<MDBox<MDE,nd>*>(box2);
if (mdbox1)
{
TS_ASSERT( mdbox2 );
if (!BoxStructureOnly)
{
const std::vector<MDE > & events1 = mdbox1->getConstEvents();
const std::vector<MDE > & events2 = mdbox2->getConstEvents();
TS_ASSERT_EQUALS( events1.size(), events2.size() );
if (events1.size() == events2.size() && events1.size() > 2)
{
// Check first and last event
for (size_t i=0; i<events1.size(); i+=events1.size()-1)
{
for (size_t d=0; d<nd; d++)
{
TS_ASSERT_DELTA( events1[i].getCenter(d), events2[i].getCenter(d), 1e-4);
}
TS_ASSERT_DELTA( events1[i].getSignal(), events2[i].getSignal(), 1e-4);
TS_ASSERT_DELTA( events1[i].getErrorSquared(), events2[i].getErrorSquared(), 1e-4);
}
}
mdbox1->releaseEvents();
mdbox2->releaseEvents();
}// Don't compare if BoxStructureOnly
} // is mdbox1
}
TS_ASSERT_EQUALS(ws1->getNumExperimentInfo(), ws2->getNumExperimentInfo());
if (ws1->getNumExperimentInfo() == ws2->getNumExperimentInfo())
{
for (uint16_t i=0; i < ws1->getNumExperimentInfo(); i++)
{
ExperimentInfo_sptr ei1 = ws1->getExperimentInfo(i);
ExperimentInfo_sptr ei2 = ws2->getExperimentInfo(i);
//TS_ASSERT_EQUALS(ei1->getInstrument()->getName(), ei2->getInstrument()->getName());
}
}
}
//=================================================================================================================
template <size_t nd>
void do_test_exec(bool FileBackEnd, bool deleteWorkspace=true, double memory=0, bool BoxStructureOnly = false)
{
typedef MDLeanEvent<nd> MDE;
//------ Start by creating the file ----------------------------------------------
// Make a 1D MDEventWorkspace
boost::shared_ptr<MDEventWorkspace<MDE,nd> > ws1 = MDEventsTestHelper::makeMDEW<nd>(10, 0.0, 10.0, 0);
ws1->getBoxController()->setSplitThreshold(100);
// Put in ADS so we can use fake data
AnalysisDataService::Instance().addOrReplace("LoadMDTest_ws", boost::dynamic_pointer_cast<IMDEventWorkspace>(ws1));
FrameworkManager::Instance().exec("FakeMDEventData", 6,
"InputWorkspace", "LoadMDTest_ws", "UniformParams", "10000", "RandomizeSignal", "1");
// FrameworkManager::Instance().exec("FakeMDEventData", 6,
// "InputWorkspace", "LoadMDTest_ws", "PeakParams", "30000, 5.0, 0.01", "RandomizeSignal", "1");
// ------ Make a ExperimentInfo entry ------------
ExperimentInfo_sptr ei(new ExperimentInfo());
ei->mutableRun().setProtonCharge(1.234);
// TODO: Add instrument
ws1->addExperimentInfo(ei);
// -------- Save it ---------------
SaveMD saver;
TS_ASSERT_THROWS_NOTHING( saver.initialize() )
TS_ASSERT( saver.isInitialized() )
TS_ASSERT_THROWS_NOTHING( saver.setProperty("InputWorkspace", "LoadMDTest_ws" ) );
TS_ASSERT_THROWS_NOTHING( saver.setPropertyValue("Filename", "LoadMDTest" + Strings::toString(nd) + ".nxs") );
// Retrieve the full path; delete any pre-existing file
std::string filename = saver.getPropertyValue("Filename");
if (Poco::File(filename).exists()) Poco::File(filename).remove();
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TS_ASSERT_THROWS_NOTHING( saver.execute(); );
TS_ASSERT( saver.isExecuted() );
//------ Now the loading -------------------------------------
// Name of the output workspace.
std::string outWSName("LoadMDTest_OutputWS");
CPUTimer tim;
LoadMD alg;
TS_ASSERT_THROWS_NOTHING( alg.initialize() )
TS_ASSERT( alg.isInitialized() )
TS_ASSERT_THROWS_NOTHING( alg.setPropertyValue("Filename", filename) );
TS_ASSERT_THROWS_NOTHING( alg.setProperty("FileBackEnd", FileBackEnd) );
TS_ASSERT_THROWS_NOTHING( alg.setProperty("Memory", memory) );
TS_ASSERT_THROWS_NOTHING( alg.setPropertyValue("OutputWorkspace", outWSName) );
TS_ASSERT_THROWS_NOTHING( alg.setProperty("MetadataOnly", false));
TS_ASSERT_THROWS_NOTHING( alg.setProperty("BoxStructureOnly", BoxStructureOnly));
TS_ASSERT_THROWS_NOTHING( alg.execute(); );
TS_ASSERT( alg.isExecuted() );
std::cout << tim << " to do the entire MDEW loading." << std::endl;
// Retrieve the workspace from data service.
IMDEventWorkspace_sptr iws;
TS_ASSERT_THROWS_NOTHING( iws = AnalysisDataService::Instance().retrieveWS<IMDEventWorkspace>(outWSName) );
TS_ASSERT(iws);
if (!iws) return;
boost::shared_ptr<MDEventWorkspace<MDE,nd> > ws = boost::dynamic_pointer_cast<MDEventWorkspace<MDLeanEvent<nd>,nd> >(iws);
// Perform the full comparison
do_compare_MDEW(ws, ws1, BoxStructureOnly);
// Look for the not-disk-cached-cause-they-are-too-small
if (memory > 0)
{
// Force a flush of the read-write cache
BoxController_sptr bc = ws->getBoxController();
DiskBuffer & dbuf = bc->getDiskBuffer();
dbuf.flushCache();
typename std::vector<MDBoxBase<MDE,nd>*> boxes;
ws->getBox()->getBoxes(boxes, 1000, false);
for (size_t i=0; i<boxes.size(); i++)
{
MDBox<MDE,nd>*box = dynamic_cast<MDBox<MDE,nd>*>(boxes[i]);
if (box)
{
TSM_ASSERT("Large box should not be in memory", !box->getInMemory());
TSM_ASSERT("Large box should be cached to disk", box->getOnDisk());
}
}
}
// Remove workspace from the data service.
if (deleteWorkspace)
{
ws->getBoxController()->closeFile(true);
AnalysisDataService::Instance().remove(outWSName);
if (Poco::File(filename).exists()) Poco::File(filename).remove();
}
}
/** Follow up test that:
* - Modifies the data in a couple of ways
* - Saves AGAIN to update a file back end
* - Re-loads to a brand new workspace and compares everything. */
template <size_t nd>
void do_test_UpdateFileBackEnd()
{
std::string outWSName("LoadMDTest_OutputWS");
IMDEventWorkspace_sptr iws;
TS_ASSERT_THROWS_NOTHING( iws = AnalysisDataService::Instance().retrieveWS<IMDEventWorkspace>(outWSName) );
TS_ASSERT(iws); if (!iws) return;
boost::shared_ptr<MDEventWorkspace<MDLeanEvent<nd>,nd> > ws2 = boost::dynamic_pointer_cast<MDEventWorkspace<MDLeanEvent<nd>,nd> >(iws);
// Modify that by adding some boxes
MDGridBox<MDLeanEvent<nd>,nd> * box = dynamic_cast<MDGridBox<MDLeanEvent<nd>,nd>*>(ws2->getBox());
box->splitContents(12);
// And add an ExperimentInfo thingie
ExperimentInfo_sptr ei(new ExperimentInfo());
ei->mutableRun().setProtonCharge(2.345);
iws->addExperimentInfo(ei);
// Add one event using addEvent(). The event will need to be written out to disk too.
for (size_t d=0; d<nd; d++) ev.setCenter(d, 0.5);
box->addEvent(ev);
// Modify a different box by accessing the events
MDBox<MDLeanEvent<nd>,nd> * box8 = dynamic_cast<MDBox<MDLeanEvent<nd>,nd>*>(box->getChild(8));
std::vector<MDLeanEvent<nd> > & events = box8->getEvents();
// Add 10 to this signal
signal_t newSignal = events[0].getSignal() + 10.0;
events[0].setSignal( float(newSignal) );
box8->releaseEvents();
// // Modify a third box by adding an event
// MDBox<MDLeanEvent<nd>,nd> * box17 = dynamic_cast<MDBox<MDLeanEvent<nd>,nd>*>(box->getChild(17));
// std::vector<MDLeanEvent<nd> > & events17 = box17->getEvents();
// MDLeanEvent<nd> ev_new(1.0, 1.0);
// box->addEvent( ev_new );
// box17->releaseEvents();
ws2->refreshCache();
// There are now 2 more events
TS_ASSERT_EQUALS( ws2->getNPoints(), 10001 );
// There are some new boxes that are not cached to disk at this point.
// Save it again.
SaveMD saver;
TS_ASSERT_THROWS_NOTHING( saver.initialize() )
TS_ASSERT( saver.isInitialized() )
TS_ASSERT_THROWS_NOTHING( saver.setPropertyValue("InputWorkspace", outWSName ) );
TS_ASSERT_THROWS_NOTHING( saver.setPropertyValue("Filename", "") );
TS_ASSERT_THROWS_NOTHING( saver.setPropertyValue("UpdateFileBackEnd", "1") );
TS_ASSERT_THROWS_NOTHING( saver.execute(); );
TS_ASSERT( saver.isExecuted() );
// Now we look at the file that's currently open
::NeXus::File * file = ws2->getBoxController()->getFile();
TSM_ASSERT_LESS_THAN( "The event_data field in the file must be at least 10002 long.", 10002, file->getInfo().dims[0] );
// The file should have been modified but that's tricky to check directly.
std::string filename = ws2->getBoxController()->getFilename();
// Now we re-re-load it!
TS_ASSERT_THROWS_NOTHING( alg.initialize() )
TS_ASSERT( alg.isInitialized() )
TS_ASSERT_THROWS_NOTHING( alg.setPropertyValue("Filename", filename) );
TS_ASSERT_THROWS_NOTHING( alg.setProperty("FileBackEnd", false) );
TS_ASSERT_THROWS_NOTHING( alg.setPropertyValue("OutputWorkspace", "reloaded_again") );
TS_ASSERT_THROWS_NOTHING( alg.execute(); );
TS_ASSERT( alg.isExecuted() );
TS_ASSERT_THROWS_NOTHING( iws = AnalysisDataService::Instance().retrieveWS<IMDEventWorkspace>("reloaded_again") );
boost::shared_ptr<MDEventWorkspace<MDLeanEvent<nd>,nd> > ws3 = boost::dynamic_pointer_cast<MDEventWorkspace<MDLeanEvent<nd>,nd> >(iws);
TS_ASSERT(ws3); if (!ws3) return;
ws3->refreshCache();
// Perform the full comparison of the second and 3rd loaded workspaces
do_compare_MDEW(ws2, ws3);
ws2->getBoxController()->closeFile(true);
AnalysisDataService::Instance().remove(outWSName);
}
//=================================================================================================================
/// Load directly to memory
}
/// Run the loading but keep the events on file and load on demand
void test_exec_1D_with_file_backEnd()
{
do_test_exec<1>(true);
}
/// Load directly to memory
}
/// Run the loading but keep the events on file and load on demand
void test_exec_3D_with_FileBackEnd()
{
do_test_exec<3>(true);
}
/// Run the loading but keep the events on file and load on demand
void test_exec_3D_with_FileBackEnd_andSmallBuffer()
{
do_test_exec<3>(true, true, 1.0);
}
/** Use the file back end,
* then change it and save to update the file at the back end.
*/
void test_exec_3D_with_FileBackEnd_then_update_SaveMDEW()
std::cout << "Starting the first step\n";
do_test_exec<3>(true, false);
std::cout << "\nStarting the update step\n";
do_test_UpdateFileBackEnd<3>();
}
/// Only load the box structure, no events
void test_exec_3D_BoxStructureOnly()
{
do_test_exec<3>(false, true, 0.0, true);
//=================================================================================================================
void testMetaDataOnly()
{
//------ Start by creating the file ----------------------------------------------
// Make a 1D MDEventWorkspace
boost::shared_ptr<MDEventWorkspace<MDLeanEvent<2>,2> > ws1 = MDEventsTestHelper::makeMDEW<2>(10, 0.0, 10.0, 0);
ws1->getBoxController()->setSplitThreshold(100);
AnalysisDataService::Instance().addOrReplace("LoadMDTest_ws", boost::dynamic_pointer_cast<IMDEventWorkspace>(ws1));
// Save it
SaveMD saver;
TS_ASSERT_THROWS_NOTHING( saver.initialize() )
TS_ASSERT( saver.isInitialized() )
TS_ASSERT_THROWS_NOTHING( saver.setProperty("InputWorkspace", "LoadMDTest_ws" ) );
TS_ASSERT_THROWS_NOTHING( saver.setPropertyValue("Filename", "LoadMDTest2.nxs") );
TS_ASSERT_THROWS_NOTHING( saver.execute(); );
TS_ASSERT( saver.isExecuted() );
// Retrieve the full path
std::string filename = saver.getPropertyValue("Filename");
//------ Now the loading -------------------------------------
// Name of the output workspace.
std::string outWSName("LoadMDTest_OutputWS");
LoadMD alg;
TS_ASSERT_THROWS_NOTHING( alg.initialize() )
TS_ASSERT( alg.isInitialized() )
TS_ASSERT_THROWS_NOTHING( alg.setPropertyValue("Filename", filename) );
TS_ASSERT_THROWS_NOTHING( alg.setProperty("FileBackEnd", false) );
TS_ASSERT_THROWS_NOTHING( alg.setProperty("Memory", 0.0) );
TS_ASSERT_THROWS_NOTHING( alg.setPropertyValue("OutputWorkspace", outWSName) );
TS_ASSERT_THROWS_NOTHING( alg.setProperty("MetadataOnly", true));
TS_ASSERT_THROWS_NOTHING( alg.execute(); );
TS_ASSERT( alg.isExecuted() );
boost::shared_ptr<MDEventWorkspace<MDLeanEvent<2>,2> > ws = AnalysisDataService::Instance().retrieveWS<MDEventWorkspace<MDLeanEvent<2>,2> >(outWSName);
TSM_ASSERT_EQUALS("Should have no events!", 0, ws->getNPoints());
TSM_ASSERT_EQUALS("Wrong number of dimensions", 2, ws->getNumDims());
AnalysisDataService::Instance().remove(outWSName);
try
{ if (Poco::File(filename).exists()) Poco::File(filename).remove(); }
catch (...)
{ /* ignore windows error */ }
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}
/** Run SaveMD with the MDHistoWorkspace */
void doTestHisto(MDHistoWorkspace_sptr ws)
{
std::string filename = "SaveMDTestHisto.nxs";
SaveMD alg1;
TS_ASSERT_THROWS_NOTHING( alg1.initialize() )
TS_ASSERT( alg1.isInitialized() )
TS_ASSERT_THROWS_NOTHING( alg1.setProperty("InputWorkspace", ws) );
TS_ASSERT_THROWS_NOTHING( alg1.setPropertyValue("Filename", filename) );
alg1.execute();
TS_ASSERT( alg1.isExecuted() );
filename = alg1.getPropertyValue("Filename");
LoadMD alg;
TS_ASSERT_THROWS_NOTHING( alg.initialize() )
TS_ASSERT( alg.isInitialized() )
TS_ASSERT_THROWS_NOTHING( alg.setPropertyValue("Filename", filename) );
TS_ASSERT_THROWS_NOTHING( alg.setPropertyValue("OutputWorkspace", "loaded") );
TS_ASSERT_THROWS_NOTHING( alg.execute(); );
TS_ASSERT( alg.isExecuted() );
MDHistoWorkspace_sptr newWS;
TS_ASSERT_THROWS_NOTHING( newWS = AnalysisDataService::Instance().retrieveWS<MDHistoWorkspace>("loaded") );
TS_ASSERT(newWS); if (!newWS) return;
TS_ASSERT_EQUALS( ws->getNPoints(), newWS->getNPoints());
TS_ASSERT_EQUALS( ws->getNumDims(), newWS->getNumDims());
for (size_t i=0; i<ws->getNPoints(); i++)
{
TS_ASSERT_DELTA(ws->getSignalAt(i), newWS->getSignalAt(i), 1e-6);
TS_ASSERT_DELTA(ws->getErrorAt(i), newWS->getErrorAt(i), 1e-6);
TS_ASSERT_DELTA(ws->getNumEventsAt(i), newWS->getNumEventsAt(i), 1e-6);
TS_ASSERT_EQUALS(ws->getIsMaskedAt(i), newWS->getIsMaskedAt(i));
}
if (Poco::File(filename).exists())
Poco::File(filename).remove();
}
Gigg, Martyn Anthony
committed
void test_histo2()
{
MDHistoWorkspace_sptr ws = MDEventsTestHelper::makeFakeMDHistoWorkspace(2.5, 2, 10, 10.0, 3.5, "histo2", 4.5);
doTestHisto(ws);
}
void test_histo3()
{
MDHistoWorkspace_sptr ws = MDEventsTestHelper::makeFakeMDHistoWorkspace(2.5, 3, 4, 10.0, 3.5, "histo3", 4.5);
doTestHisto(ws);
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/// More of an integration test as it uses both load and save.
void test_save_and_load_special_coordinates()
{
MDEventWorkspace1Lean::sptr ws = MDEventsTestHelper::makeMDEW<1>(10, 0.0, 10.0, 2);
// Set the special coordinate system
const SpecialCoordinateSystem appliedCoordinateSystem = QSample;
ws->setCoordinateSystem(appliedCoordinateSystem);
const std::string inputWSName = "SaveMDSpecialCoordinatesTest";
const std::string fileName = inputWSName + ".nxs";
AnalysisDataService::Instance().addOrReplace(inputWSName, ws);
SaveMD saveAlg;
saveAlg.initialize();
saveAlg.isInitialized();
saveAlg.setPropertyValue("InputWorkspace", inputWSName);
saveAlg.setPropertyValue("Filename", fileName);
saveAlg.execute();
TS_ASSERT( saveAlg.isExecuted() );
LoadMD loadAlg;
loadAlg.initialize();
loadAlg.isInitialized();
loadAlg.setPropertyValue("Filename", fileName);
loadAlg.setProperty("FileBackEnd", false);
loadAlg.setPropertyValue("OutputWorkspace", "reloaded_again");
loadAlg.execute();
TS_ASSERT( loadAlg.isExecuted() );
// Check that the special coordinate system is the same before the save-load cycle.
TS_ASSERT_EQUALS(appliedCoordinateSystem, ws->getSpecialCoordinateSystem());
if (Poco::File(fileName).exists())
{
Poco::File(fileName).remove();
}
AnalysisDataService::Instance().remove(inputWSName);
AnalysisDataService::Instance().remove("OutputWorkspace");
}
};
#endif /* MANTID_MDEVENTS_LOADMDEWTEST_H_ */