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#ifndef MANTID_ALGORITHMS_STITCH1DMANYTEST_H_
#define MANTID_ALGORITHMS_STITCH1DMANYTEST_H_
#include <cxxtest/TestSuite.h>
#include "MantidAPI/AnalysisDataService.h"
#include "MantidAPI/Axis.h"
#include "MantidAPI/ITableWorkspace.h"
#include "MantidAPI/MatrixWorkspace.h"
#include "MantidAPI/WorkspaceFactory.h"
#include "MantidAlgorithms/Stitch1D.h"
#include "MantidAlgorithms/Stitch1DMany.h"
#include "MantidAlgorithms/CreateWorkspace.h"
#include "MantidAlgorithms/GroupWorkspaces.h"
#include "MantidKernel/UnitFactory.h"
#include <math.h>
using namespace Mantid::API;
using namespace Mantid::Kernel;
using Mantid::Algorithms::Stitch1DMany;
using Mantid::Algorithms::CreateWorkspace;
using Mantid::Algorithms::GroupWorkspaces;
class Stitch1DManyTest : public CxxTest::TestSuite {
private:
/** Create a histogram workspace with two spectra and 10 bins. This can also
* be run using the CreateWorkspace algorithm which leaves the output workspace
* in the ADS as well.
* @param xstart :: the first X value (common to both spectra)
* @param deltax :: the bin width
* @param value1 :: the Y counts in the first spectrum (constant for all X)
* @param value2 :: the Y counts in the second spectrum (constant for all X)
* @param runAlg :: set true to run the CreateWorkspace algorithm
* @oaram outWSName :: output workspace name used if running CreateWorkspace
*/
MatrixWorkspace_sptr createUniformWorkspace(double xstart, double deltax,
double value1, double value2,
bool runAlg = false,
std::string outWSName = "") {
std::vector<double> xData1(nbins + 1);
std::vector<double> yData1(nbins);
std::vector<double> eData1(nbins);
std::vector<double> xData2(nbins + 1);
std::vector<double> yData2(nbins);
std::vector<double> eData2(nbins);
for (int i = 0; i < nbins; i++) {
// First spectrum
xData1[i] = xstart + i * deltax;
yData1[i] = value1;
eData1[i] = std::sqrt(value1);
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xData2[i] = xstart + i * deltax;
yData2[i] = value2;
eData2[i] = std::sqrt(value2);
}
xData1[nbins] = xData1[nbins - 1] + deltax;
xData2[nbins] = xData2[nbins - 1] + deltax;
MatrixWorkspace_sptr ws;
if (!runAlg) {
ws = WorkspaceFactory::Instance().create("Workspace2D", 2, nbins + 1,
nbins);
ws->dataX(0) = xData1;
ws->dataX(1) = xData2;
ws->dataY(0) = yData1;
ws->dataY(1) = yData2;
ws->dataE(0) = eData1;
ws->dataE(1) = eData2;
ws->getAxis(0)->unit() = UnitFactory::Instance().create("Wavelength");
}
else {
// Concatenate data vectors into one vector
xData1.insert(xData1.end(), xData2.begin(), xData2.end());
yData1.insert(yData1.end(), yData2.begin(), yData2.end());
eData1.insert(eData1.end(), eData2.begin(), eData2.end());
CreateWorkspace cw;
cw.initialize();
cw.setProperty("DataX", xData1);
cw.setProperty("DataY", yData1);
cw.setProperty("DataE", eData1);
cw.setProperty("NSpec", 2);
cw.setProperty("UnitX", "Wavelength");
cw.setPropertyValue("OutputWorkspace", outWSName);
cw.execute();
ws = AnalysisDataService::Instance().retrieveWS<MatrixWorkspace>(
outWSName);
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/** Groups workspaces using GroupWorkspaces algorithm. The output workpace is
* left in the ADS as well.
* @param inputWSNames :: input workspaces names
* @param outputWSName :: output workspace name
*/
WorkspaceGroup_sptr doGroupWorkspaces(std::string inputWSNames, std::string outWSName) {
GroupWorkspaces gw;
gw.initialize();
gw.setProperty("InputWorkspaces", inputWSNames);
gw.setProperty("OutputWorkspace", outWSName);
gw.execute();
WorkspaceGroup_sptr ws =
AnalysisDataService::Instance().retrieveWS<WorkspaceGroup>(outWSName);
return ws;
}
/** Obtain all algorithm histories from a workspace
* @param inputWS :: the input workspace
* @return vector of names of algorithm histories
*/
std::vector<std::string> getHistory(MatrixWorkspace_sptr inputWS) {
std::vector<std::string> histNames;
auto histories = inputWS->history().getAlgorithmHistories();
for (auto &hist : histories) {
histNames.push_back(hist->name());
}
return histNames;
}
public:
// This pair of boilerplate methods prevent the suite being created statically
// This means the constructor isn't called when running other tests
static Stitch1DManyTest *createSuite() { return new Stitch1DManyTest(); }
static void destroySuite(Stitch1DManyTest *suite) { delete suite; }
void test_init() {
Stitch1DMany alg;
TS_ASSERT_THROWS_NOTHING(alg.initialize());
TS_ASSERT(alg.isInitialized());
}
void test_throws_with_too_few_workspaces() {
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "ws1");
alg.setProperty("Params", "0.1, 0.1, 1.8");
alg.setProperty("StartOverlaps", "0.8");
alg.setProperty("EndOverlaps", "1.1");
alg.setPropertyValue("OutputWorkspace", "outws");
TS_ASSERT_THROWS(alg.execute(), std::runtime_error);
}
void test_throws_with_wrong_number_of_start_overlaps() {
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "ws1, ws2");
alg.setProperty("Params", "0.1");
alg.setProperty("StartOverlaps", "-0.5, -0.6");
alg.setProperty("EndOverlaps", "0.5");
alg.setPropertyValue("OutputWorkspace", "outws");
TS_ASSERT_THROWS(alg.execute(), std::runtime_error);
}
void test_throws_with_wrong_number_of_end_overlaps() {
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "ws1, ws2");
alg.setProperty("Params", "0.1");
alg.setProperty("StartOverlaps", "-0.5");
alg.setProperty("EndOverlaps", "0.5, 0.6");
alg.setPropertyValue("OutputWorkspace", "outws");
TS_ASSERT_THROWS(alg.execute(), std::runtime_error);
}
void test_throws_if_no_params() {
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "ws1, ws2");
alg.setProperty("StartOverlaps", "-0.5, -0.6");
alg.setProperty("EndOverlaps", "0.5, 0.6");
alg.setPropertyValue("OutputWorkspace", "outws");
TS_ASSERT_THROWS(alg.execute(), std::runtime_error);
}
void test_workspace_types_differ_throws() {
// One table workspace, one matrix workspace
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2.);
auto ws2 = WorkspaceFactory::Instance().createTable();
AnalysisDataService::Instance().add("ws1", ws1);
AnalysisDataService::Instance().add("ws2", ws2);
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "ws1, ws2");
alg.setProperty("Params", "0.1");
alg.setProperty("StartOverlaps", "-0.5, -0.6");
alg.setProperty("EndOverlaps", "0.5, 0.6");
alg.setPropertyValue("OutputWorkspace", "outws");
TS_ASSERT_THROWS(alg.execute(), std::runtime_error);
}
void test_workspace_group_size_differ_throws() {
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2.);
auto ws2 = createUniformWorkspace(0.8, 0.1, 1.1, 2.1);
auto ws3 = createUniformWorkspace(1.6, 0.1, 1.5, 2.5);
WorkspaceGroup_sptr group1 = boost::make_shared<WorkspaceGroup>();
group1->addWorkspace(ws1);
group1->addWorkspace(ws2);
WorkspaceGroup_sptr group2 = boost::make_shared<WorkspaceGroup>();
group2->addWorkspace(ws3);
// The algorithm needs the workspaces to be in the ADS
AnalysisDataService::Instance().addOrReplace("group1", group1);
AnalysisDataService::Instance().addOrReplace("group2", group2);
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "group1, group2");
alg.setProperty("Params", "0.1, 0.1, 2.6");
alg.setProperty("StartOverlaps", "0.8, 1.6");
alg.setProperty("EndOverlaps", "1.1, 1.8");
alg.setPropertyValue("OutputWorkspace", "outws");
TS_ASSERT_THROWS(alg.execute(), std::runtime_error);
}
void test_two_workspaces() {
// Two matrix workspaces with two spectra each
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2.);
auto ws2 = createUniformWorkspace(0.8, 0.1, 1.1, 2.1);
// The algorithm needs the workspaces to be in the ADS
AnalysisDataService::Instance().addOrReplace("ws1", ws1);
AnalysisDataService::Instance().addOrReplace("ws2", ws2);
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "ws1, ws2");
alg.setProperty("Params", "0.1, 0.1, 1.8");
alg.setProperty("StartOverlaps", "0.8");
alg.setProperty("EndOverlaps", "1.1");
alg.setPropertyValue("OutputWorkspace", "outws");
alg.execute();
// Test output ws
Workspace_sptr outws = alg.getProperty("OutputWorkspace");
auto stitched = boost::dynamic_pointer_cast<MatrixWorkspace>(outws);
TS_ASSERT_EQUALS(stitched->getNumberHistograms(), 2);
TS_ASSERT_EQUALS(stitched->blocksize(), 17);
TS_ASSERT_DELTA(stitched->y(0)[0], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[9], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[16], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[0], 2, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[9], 2, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[16], 2, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[0], 1, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[9], 0.77919, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[16], 1.24316, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[0], 1.41421, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[9], 1.10982, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[16], 1.79063, 0.00001);
// Test out scale factors
std::vector<double> scales = alg.getProperty("OutScaleFactors");
TS_ASSERT_EQUALS(scales.size(), 1);
// Only scale factor for first spectrum is returned
TS_ASSERT_DELTA(scales.front(), 0.90909, 0.00001);
// If scale factor for second spectrum was returned it should be 0.952381
// Cross-check that the result of using Stitch1DMany with two workspaces
// is the same as using Stitch1D
Mantid::Algorithms::Stitch1D alg2;
alg2.setChild(true);
alg2.initialize();
alg2.setProperty("LHSWorkspace", ws1);
alg2.setProperty("RHSWorkspace", ws2);
alg2.setProperty("Params", "0.1, 0.1, 1.8");
alg2.setProperty("StartOverlap", "0.8");
alg2.setProperty("EndOverlap", "1.1");
alg2.setPropertyValue("OutputWorkspace", "outws");
alg2.execute();
MatrixWorkspace_sptr stitched2 = alg2.getProperty("OutputWorkspace");
TS_ASSERT_EQUALS(stitched->x(0).rawData(), stitched2->x(0).rawData());
TS_ASSERT_EQUALS(stitched->y(0).rawData(), stitched2->y(0).rawData());
TS_ASSERT_EQUALS(stitched->e(0).rawData(), stitched2->e(0).rawData());
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// Remove workspaces from ADS
AnalysisDataService::Instance().remove("ws1");
AnalysisDataService::Instance().remove("ws2");
}
void test_three_workspaces() {
// Three matrix workspaces with two spectra each
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2.);
auto ws2 = createUniformWorkspace(0.8, 0.1, 1.1, 2.1);
auto ws3 = createUniformWorkspace(1.6, 0.1, 1.5, 2.5);
// The algorithm needs the workspaces to be in the ADS
AnalysisDataService::Instance().addOrReplace("ws1", ws1);
AnalysisDataService::Instance().addOrReplace("ws2", ws2);
AnalysisDataService::Instance().addOrReplace("ws3", ws3);
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "ws1, ws2, ws3");
alg.setProperty("Params", "0.1, 0.1, 2.6");
alg.setProperty("StartOverlaps", "0.8, 1.6");
alg.setProperty("EndOverlaps", "1.1, 1.8");
alg.setPropertyValue("OutputWorkspace", "outws");
alg.execute();
// Test output ws
Workspace_sptr outws = alg.getProperty("OutputWorkspace");
auto stitched = boost::dynamic_pointer_cast<MatrixWorkspace>(outws);
TS_ASSERT_EQUALS(stitched->getNumberHistograms(), 2);
TS_ASSERT_EQUALS(stitched->blocksize(), 25);
// First spectrum, Y values
TS_ASSERT_DELTA(stitched->y(0)[0], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[9], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[16], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[24], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[0], 2, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[9], 2, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[16], 2, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[24], 2, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[0], 1, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[9], 0.77919, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[16], 0.90865, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[24], 1.33144, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[0], 1.41421, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[9], 1.10982, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[16], 1.33430, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[24], 2.00079, 0.00001);
// Test out scale factors
std::vector<double> scales = alg.getProperty("OutScaleFactors");
TS_ASSERT_EQUALS(scales.size(), 2);
TS_ASSERT_DELTA(scales.front(), 0.9090, 0.0001);
TS_ASSERT_DELTA(scales.back(), 0.6666, 0.0001);
// Remove workspaces from ADS
AnalysisDataService::Instance().remove("ws1");
AnalysisDataService::Instance().remove("ws2");
AnalysisDataService::Instance().remove("ws3");
}
void test_stitches_three_no_overlaps_specified_should_still_work() {
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2.);
auto ws2 = createUniformWorkspace(0.8, 0.1, 1.1, 2.1);
auto ws3 = createUniformWorkspace(1.6, 0.1, 1.5, 2.5);
// The algorithm needs the workspaces to be in the ADS
AnalysisDataService::Instance().addOrReplace("ws1", ws1);
AnalysisDataService::Instance().addOrReplace("ws2", ws2);
AnalysisDataService::Instance().addOrReplace("ws3", ws3);
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "ws1, ws2, ws3");
alg.setProperty("Params", "0.1, 0.1, 2.6");
alg.setPropertyValue("OutputWorkspace", "outws");
TS_ASSERT_THROWS_NOTHING(alg.execute());
}
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void test_three_workspaces_scale_factor_given() {
// Three matrix workspaces with two spectra each
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2.);
auto ws2 = createUniformWorkspace(0.8, 0.1, 1.1, 2.1);
auto ws3 = createUniformWorkspace(1.6, 0.1, 1.5, 2.5);
// The algorithm needs the workspaces to be in the ADS
AnalysisDataService::Instance().addOrReplace("ws1", ws1);
AnalysisDataService::Instance().addOrReplace("ws2", ws2);
AnalysisDataService::Instance().addOrReplace("ws3", ws3);
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "ws1, ws2, ws3");
alg.setProperty("Params", "0.1, 0.1, 2.6");
alg.setProperty("StartOverlaps", "0.8, 1.6");
alg.setProperty("EndOverlaps", "1.1, 1.8");
alg.setPropertyValue("OutputWorkspace", "outws");
alg.setProperty("UseManualScaleFactor", "1");
alg.setProperty("ManualScaleFactor", 0.5);
alg.execute();
// Test output ws
Workspace_sptr outws = alg.getProperty("OutputWorkspace");
auto stitched = boost::dynamic_pointer_cast<MatrixWorkspace>(outws);
TS_ASSERT_EQUALS(stitched->getNumberHistograms(), 2);
TS_ASSERT_EQUALS(stitched->blocksize(), 25);
// First spectrum, Y values
TS_ASSERT_DELTA(stitched->y(0)[0], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[10], 0.55000, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[18], 0.75000, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[0], 2, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[10], 1.05000, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[18], 1.25000, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[0], 1.00000, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[10], 0.52440, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[18], 0.61237, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[0], 1.41421, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[10], 0.72457, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[18], 0.79057, 0.00001);
// Test out scale factors
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std::vector<double> scales = alg.getProperty("OutScaleFactors");
TS_ASSERT_EQUALS(scales.size(), 2);
TS_ASSERT_EQUALS(scales.front(), 0.5);
TS_ASSERT_EQUALS(scales.back(), 0.5);
// Remove workspaces from ADS
AnalysisDataService::Instance().remove("ws1");
AnalysisDataService::Instance().remove("ws2");
AnalysisDataService::Instance().remove("ws3");
}
void test_one_group_two_workspaces() {
// One group with two workspaces
// Wrong: this algorithm can't stitch workspaces within a group
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2.);
auto ws2 = createUniformWorkspace(0.8, 0.1, 1.1, 2.1);
WorkspaceGroup_sptr group = boost::make_shared<WorkspaceGroup>();
group->addWorkspace(ws1);
group->addWorkspace(ws2);
// The algorithm needs the workspaces to be in the ADS
AnalysisDataService::Instance().addOrReplace("group1", group);
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "group1");
alg.setProperty("Params", "0.1");
alg.setProperty("StartOverlaps", "0.8");
alg.setProperty("EndOverlaps", "1.1");
alg.setPropertyValue("OutputWorkspace", "outws");
TS_ASSERT_THROWS(alg.execute(), std::runtime_error);
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AnalysisDataService::Instance().clear();
}
void test_groups_with_single_workspace() {
// Three groups with a single matrix workspace each. Each matrix workspace
// has two spectra.
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2.);
auto ws2 = createUniformWorkspace(0.8, 0.1, 1.1, 2.1);
auto ws3 = createUniformWorkspace(1.6, 0.1, 1.5, 2.5);
WorkspaceGroup_sptr group1 = boost::make_shared<WorkspaceGroup>();
group1->addWorkspace(ws1);
WorkspaceGroup_sptr group2 = boost::make_shared<WorkspaceGroup>();
group2->addWorkspace(ws2);
WorkspaceGroup_sptr group3 = boost::make_shared<WorkspaceGroup>();
group3->addWorkspace(ws3);
// The algorithm needs the workspaces to be in the ADS
AnalysisDataService::Instance().addOrReplace("group1", group1);
AnalysisDataService::Instance().addOrReplace("group2", group2);
AnalysisDataService::Instance().addOrReplace("group3", group3);
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "group1, group2, group3");
alg.setProperty("Params", "0.1, 0.1, 2.6");
alg.setProperty("StartOverlaps", "0.8, 1.6");
alg.setProperty("EndOverlaps", "1.1, 1.8");
alg.setPropertyValue("OutputWorkspace", "outws");
alg.execute();
// The above is equivalent to what we've done in test_three_workspaces()
// so we should get the same values in the output workspace
// the only difference is that output will be a group
// Test output ws
Workspace_sptr outws = alg.getProperty("OutputWorkspace");
auto group = boost::dynamic_pointer_cast<WorkspaceGroup>(outws);
TS_ASSERT_EQUALS(group->getNumberOfEntries(), 1);
auto stitched =
boost::dynamic_pointer_cast<MatrixWorkspace>(group->getItem(0));
TS_ASSERT_EQUALS(stitched->getNumberHistograms(), 2);
TS_ASSERT_EQUALS(stitched->blocksize(), 25);
// First spectrum, Y values
TS_ASSERT_DELTA(stitched->y(0)[0], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[9], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[16], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[24], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[0], 2, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[9], 2, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[16], 2, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[24], 2, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[0], 1, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[9], 0.77919, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[16], 0.90865, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[24], 1.33144, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[0], 1.41421, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[9], 1.10982, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[16], 1.33430, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[24], 2.00079, 0.00001);
// Test out scale factors
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std::vector<double> scales = alg.getProperty("OutScaleFactors");
TS_ASSERT_EQUALS(scales.size(), 2);
TS_ASSERT_DELTA(scales.front(), 0.9090, 0.0001);
TS_ASSERT_DELTA(scales.back(), 0.6666, 0.0001);
// Clear the ADS
AnalysisDataService::Instance().clear();
}
void test_two_groups_with_two_workspaces_each() {
// Two groups with two matrix workspaces each.
// Each matrix workspace has two spectra.
// First group
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2.);
auto ws2 = createUniformWorkspace(0.1, 0.1, 1.5, 2.5);
WorkspaceGroup_sptr group1 = boost::make_shared<WorkspaceGroup>();
group1->addWorkspace(ws1);
group1->addWorkspace(ws2);
// Second group
auto ws3 = createUniformWorkspace(0.8, 0.1, 1.1, 2.1);
auto ws4 = createUniformWorkspace(0.8, 0.1, 1.6, 2.6);
WorkspaceGroup_sptr group2 = boost::make_shared<WorkspaceGroup>();
group2->addWorkspace(ws3);
group2->addWorkspace(ws4);
// The algorithm needs the workspaces to be in the ADS
AnalysisDataService::Instance().addOrReplace("group1", group1);
AnalysisDataService::Instance().addOrReplace("group2", group2);
// ws1 will be stitched with ws3
// ws2 will be stitched with ws4
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "group1, group2");
alg.setProperty("Params", "0.1");
alg.setProperty("StartOverlaps", "0.8");
alg.setProperty("EndOverlaps", "1.1");
alg.setPropertyValue("OutputWorkspace", "outws");
alg.execute();
// Test output ws
Workspace_sptr outws = alg.getProperty("OutputWorkspace");
auto group = boost::dynamic_pointer_cast<WorkspaceGroup>(outws);
TS_ASSERT_EQUALS(group->getNumberOfEntries(), 2);
// First item in the output group
auto stitched =
boost::dynamic_pointer_cast<MatrixWorkspace>(group->getItem(0));
TS_ASSERT_EQUALS(stitched->getNumberHistograms(), 2);
TS_ASSERT_EQUALS(stitched->blocksize(), 17);
// First spectrum, Y values
TS_ASSERT_DELTA(stitched->y(0)[0], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[9], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[16], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[0], 2, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[9], 2, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[16], 2, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[0], 1, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[9], 0.77919, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[16], 1.24316, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[0], 1.41421, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[9], 1.10982, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[16], 1.79063, 0.00001);
// Second item in the output group
stitched = boost::dynamic_pointer_cast<MatrixWorkspace>(group->getItem(1));
TS_ASSERT_EQUALS(stitched->getNumberHistograms(), 2);
TS_ASSERT_EQUALS(stitched->blocksize(), 17);
// First spectrum, Y values
TS_ASSERT_DELTA(stitched->y(0)[0], 1.5, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[9], 1.5, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[16], 1.5, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[0], 2.5, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[9], 2.5, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[16], 2.5, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[0], 1.22474, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[9], 0.95883, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[16], 1.54110, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[0], 1.58114, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[9], 1.24263, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[16], 2.00959, 0.00001);
// Test out scale factors
std::vector<double> scales = alg.getProperty("OutScaleFactors");
TS_ASSERT_EQUALS(scales.size(), 2);
TS_ASSERT_DELTA(scales.front(), 0.9090, 0.0001); // 1.0/1.1
TS_ASSERT_DELTA(scales.back(), 0.9375, 0.0001); // 1.5/1.6
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AnalysisDataService::Instance().clear();
}
void test_two_groups_with_two_workspaces_scale_factor_given() {
// Two groups with two matrix workspaces each.
// Each matrix workspace has two spectra.
// First group
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2.);
auto ws2 = createUniformWorkspace(0.1, 0.1, 1.5, 2.5);
WorkspaceGroup_sptr group1 = boost::make_shared<WorkspaceGroup>();
group1->addWorkspace(ws1);
group1->addWorkspace(ws2);
// Second group
auto ws3 = createUniformWorkspace(0.8, 0.1, 1.1, 2.1);
auto ws4 = createUniformWorkspace(0.8, 0.1, 1.6, 2.6);
WorkspaceGroup_sptr group2 = boost::make_shared<WorkspaceGroup>();
group2->addWorkspace(ws3);
group2->addWorkspace(ws4);
// The algorithm needs the workspaces to be in the ADS
AnalysisDataService::Instance().addOrReplace("group1", group1);
AnalysisDataService::Instance().addOrReplace("group2", group2);
// ws1 will be stitched with ws3
// ws2 will be stitched with ws4
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "group1, group2");
alg.setProperty("Params", "0.1");
alg.setProperty("StartOverlaps", "0.8");
alg.setProperty("EndOverlaps", "1.1");
alg.setProperty("UseManualScaleFactor", "1");
alg.setProperty("ManualScaleFactor", 0.5);
alg.setPropertyValue("OutputWorkspace", "outws");
alg.execute();
// The above is equivalent to what we've don in test_three_workspaces()
// so we should get the same values in the output workspace
// the only difference is that output will be a group
// Test output ws
Workspace_sptr outws = alg.getProperty("OutputWorkspace");
auto group = boost::dynamic_pointer_cast<WorkspaceGroup>(outws);
TS_ASSERT_EQUALS(group->getNumberOfEntries(), 2);
// First item in the output group
auto stitched =
boost::dynamic_pointer_cast<MatrixWorkspace>(group->getItem(0));
TS_ASSERT_EQUALS(stitched->getNumberHistograms(), 2);
TS_ASSERT_EQUALS(stitched->blocksize(), 17);
// First spectrum, Y values
TS_ASSERT_DELTA(stitched->y(0)[0], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[9], 0.64705, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[16], 0.55000, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[0], 2, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[9], 1.24752, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[16], 1.05000, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[0], 1, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[9], 0.46442, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[16], 0.52440, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[0], 1.41421, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[9], 0.64485, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[16], 0.72456, 0.00001);
// Second item in the output group
stitched = boost::dynamic_pointer_cast<MatrixWorkspace>(group->getItem(1));
TS_ASSERT_EQUALS(stitched->getNumberHistograms(), 2);
TS_ASSERT_EQUALS(stitched->blocksize(), 17);
// First spectrum, Y values
TS_ASSERT_DELTA(stitched->y(0)[0], 1.5, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[9], 0.94736, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[16], 0.8, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[0], 2.5, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[9], 1.54762, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[16], 1.3, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[0], 1.22474, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[9], 0.56195, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[16], 0.63245, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[0], 1.58114, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[9], 0.71824, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[16], 0.80622, 0.00001);
// Test out scale factors
std::vector<double> scales = alg.getProperty("OutScaleFactors");
TS_ASSERT_EQUALS(scales.size(), 2);
TS_ASSERT_DELTA(scales.front(), 0.5000, 0.0001);
TS_ASSERT_DELTA(scales.back(), 0.5000, 0.0001);
// Clear the ADS
AnalysisDataService::Instance().clear();
}
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void test_two_groups_with_three_workspaces_scale_factor_from_period() {
// Three groups with two matrix workspaces each.
// Each matrix workspace has two spectra.
// First group
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2.);
auto ws2 = createUniformWorkspace(0.1, 0.1, 1.5, 2.5);
WorkspaceGroup_sptr group1 = boost::make_shared<WorkspaceGroup>();
group1->addWorkspace(ws1);
group1->addWorkspace(ws2);
// Second group
auto ws3 = createUniformWorkspace(0.8, 0.1, 1.1, 2.1);
auto ws4 = createUniformWorkspace(0.8, 0.1, 1.6, 2.6);
WorkspaceGroup_sptr group2 = boost::make_shared<WorkspaceGroup>();
group2->addWorkspace(ws3);
group2->addWorkspace(ws4);
// Third group
auto ws5 = createUniformWorkspace(1.6, 0.1, 1.5, 2.5);
auto ws6 = createUniformWorkspace(1.6, 0.1, 1.6, 3.0);
WorkspaceGroup_sptr group3 = boost::make_shared<WorkspaceGroup>();
group3->addWorkspace(ws5);
group3->addWorkspace(ws6);
// The algorithm needs the workspaces to be in the ADS
AnalysisDataService::Instance().addOrReplace("group1", group1);
AnalysisDataService::Instance().addOrReplace("group2", group2);
AnalysisDataService::Instance().addOrReplace("group3", group3);
// ws1 will be stitched with ws3 and ws5
// ws2 will be stitched with ws4 and ws6
Stitch1DMany alg;
alg.setChild(true);
alg.initialize();
alg.setProperty("InputWorkspaces", "group1, group2, group3");
alg.setProperty("Params", "0.1, 0.1, 2.6");
alg.setProperty("StartOverlaps", "0.8, 1.6");
alg.setProperty("EndOverlaps", "1.1, 1.9");
alg.setProperty("UseManualScaleFactor", "1");
alg.setProperty("ManualScaleFactor", 1.0);
alg.setProperty("ScaleFactorFromPeriod", 1);
alg.setPropertyValue("OutputWorkspace", "outws");
alg.execute();
// By setting ManualScaleFactor to 1.0 (default value) it allows workspaces
// in other periods to be scaled by scale factors from a specific period.
// Periods 0 and 2 workspaces will be scaled by scale factors from period 1.
// Test output ws
Workspace_sptr outws = alg.getProperty("OutputWorkspace");
auto group = boost::dynamic_pointer_cast<WorkspaceGroup>(outws);
TS_ASSERT_EQUALS(group->getNumberOfEntries(), 2);
// First item in the output group
auto stitched =
boost::dynamic_pointer_cast<MatrixWorkspace>(group->getItem(0));
TS_ASSERT_EQUALS(stitched->getNumberHistograms(), 2);
TS_ASSERT_EQUALS(stitched->blocksize(), 25);
// First spectrum, Y values
TS_ASSERT_DELTA(stitched->y(0)[0], 1, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[9], 1.01589, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[16], 0.97288, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[24], 0.9375, 0.00001);
// Second spectrum, Y values
TS_ASSERT_DELTA(stitched->y(1)[0], 2, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[9], 1.98375, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[16], 1.70307, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[24], 1.56250, 0.00001);
// First spectrum, E values
TS_ASSERT_DELTA(stitched->e(0)[0], 1, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[9], 0.70111, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[16], 0.60401, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[24], 0.76547, 0.00001);
// Second spectrum, E values
TS_ASSERT_DELTA(stitched->e(1)[0], 1.41421, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[9], 0.97973, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[16], 0.79916, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[24], 0.98821, 0.00001);
// Second item in the output group
stitched = boost::dynamic_pointer_cast<MatrixWorkspace>(group->getItem(1));
TS_ASSERT_EQUALS(stitched->getNumberHistograms(), 2);
TS_ASSERT_EQUALS(stitched->blocksize(), 25);
// First spectrum, Y values
TS_ASSERT_DELTA(stitched->y(0)[0], 1.5, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[9], 1.5, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[16], 1.15385, 0.00001);
TS_ASSERT_DELTA(stitched->y(0)[24], 1, 0.00001);
// Second spectrum, Y values
TS_ASSERT_DELTA(stitched->y(1)[0], 2.5, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[9], 2.46735, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[16], 2.06568, 0.00001);
TS_ASSERT_DELTA(stitched->y(1)[24], 1.87500, 0.00001);
// First spectrum, E values
TS_ASSERT_DELTA(stitched->e(0)[0], 1.22474, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[9], 0.85194, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[16], 0.65779, 0.00001);
TS_ASSERT_DELTA(stitched->e(0)[24], 0.79057, 0.00001);
// Second spectrum, E values
TS_ASSERT_DELTA(stitched->e(1)[0], 1.58114, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[9], 1.09265, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[16], 0.88013, 0.00001);
TS_ASSERT_DELTA(stitched->e(1)[24], 1.08253, 0.00001);
// Test out scale factors
std::vector<double> scales = alg.getProperty("OutScaleFactors");
TS_ASSERT_EQUALS(scales.size(), 4);
TS_ASSERT_DELTA(scales[0], 0.9375, 0.0001);
TS_ASSERT_DELTA(scales[1], 0.6249, 0.0001);
TS_ASSERT_DELTA(scales[2], 0.9375, 0.0001);
TS_ASSERT_DELTA(scales[3], 0.6249, 0.0001);
// Clear the ADS
AnalysisDataService::Instance().clear();
}
void test_two_workspaces_history() {
// This test is functionally similar to test_two_workspaces
// Two matrix workspaces with two spectra each
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2., true, "ws1");
auto ws2 = createUniformWorkspace(0.8, 0.1, 1.1, 2.1, true, "ws2");
Stitch1DMany alg;
alg.initialize();
alg.setProperty("InputWorkspaces", "ws1, ws2");
alg.setProperty("Params", "0.1, 0.1, 1.8");
alg.setProperty("StartOverlaps", "0.8");
alg.setProperty("EndOverlaps", "1.1");
alg.setPropertyValue("OutputWorkspace", "outws");
alg.execute();
Workspace_sptr outws = alg.getProperty("OutputWorkspace");
auto stitched =
AnalysisDataService::Instance().retrieveWS<MatrixWorkspace>("outws");
// Test the algorithm histories
std::vector<std::string> histNames;
auto histories = stitched->history().getAlgorithmHistories();
for (auto &hist : histories) {
histNames.push_back(hist->name());
TS_ASSERT_EQUALS(histNames[0], "CreateWorkspace");
TS_ASSERT_EQUALS(histNames[1], "CreateWorkspace");
TS_ASSERT_EQUALS(histNames[2], "Stitch1DMany");
// Remove workspaces from ADS
AnalysisDataService::Instance().clear();
}
void test_two_groups_history() {
// This test is functionally similar to
// test_two_groups_with_two_workspaces_each
// Two groups with two matrix workspaces each.
// Each matrix workspace has two spectra.
// First group
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2., true, "ws1");
auto ws2 = createUniformWorkspace(0.1, 0.1, 1.5, 2.5, true, "ws2");
WorkspaceGroup_sptr group1 = doGroupWorkspaces("ws1, ws2", "group1");
// Second group
auto ws3 = createUniformWorkspace(0.8, 0.1, 1.1, 2.1, true, "ws3");
auto ws4 = createUniformWorkspace(0.8, 0.1, 1.6, 2.6, true, "ws4");
WorkspaceGroup_sptr group2 = doGroupWorkspaces("ws3, ws4", "group2");
Stitch1DMany alg;
alg.initialize();
alg.setProperty("InputWorkspaces", "group1, group2");
alg.setProperty("Params", "0.1");
alg.setProperty("StartOverlaps", "0.8");
alg.setProperty("EndOverlaps", "1.1");
alg.setPropertyValue("OutputWorkspace", "outws");
alg.execute();
// Test output ws
Workspace_sptr outws = alg.getProperty("OutputWorkspace");
auto group = AnalysisDataService::Instance().retrieveWS<WorkspaceGroup>("outws");
TS_ASSERT_EQUALS(group->getNumberOfEntries(), 2);
// First item in the output group
auto stitched =
boost::dynamic_pointer_cast<MatrixWorkspace>(group->getItem(0));
// Test the algorithm histories
std::vector<std::string> histNames;
auto histories = stitched->history().getAlgorithmHistories();
for (auto &hist : histories) {
histNames.push_back(hist->name());
TS_ASSERT_EQUALS(histNames[0], "CreateWorkspace");
TS_ASSERT_EQUALS(histNames[1], "GroupWorkspaces");
TS_ASSERT_EQUALS(histNames[2], "CreateWorkspace");
TS_ASSERT_EQUALS(histNames[3], "GroupWorkspaces");
TS_ASSERT_EQUALS(histNames[4], "Stitch1DMany");
// Remove workspaces from ADS
AnalysisDataService::Instance().clear();
}
void test_two_groups_scale_factor_from_period_history() {
// This test is functionally similar to
// test_two_groups_with_three_workspaces_scale_factor_from_period
// Three groups with two matrix workspaces each.
// Each matrix workspace has two spectra.
// First group
auto ws1 = createUniformWorkspace(0.1, 0.1, 1., 2., true, "ws1");
auto ws2 = createUniformWorkspace(0.1, 0.1, 1.5, 2.5, true, "ws2");
WorkspaceGroup_sptr group1 = doGroupWorkspaces("ws1, ws2", "group1");
// Second group
auto ws3 = createUniformWorkspace(0.8, 0.1, 1.1, 2.1, true, "ws3");
auto ws4 = createUniformWorkspace(0.8, 0.1, 1.6, 2.6, true, "ws4");
WorkspaceGroup_sptr group2 = doGroupWorkspaces("ws3, ws4", "group2");
// Third group
auto ws5 = createUniformWorkspace(1.6, 0.1, 1.5, 2.5, true, "ws5");
auto ws6 = createUniformWorkspace(1.6, 0.1, 1.6, 3.0, true, "ws6");
WorkspaceGroup_sptr group3 = doGroupWorkspaces("ws5, ws6", "group3");
Stitch1DMany alg;
alg.initialize();
alg.setProperty("InputWorkspaces", "group1, group2, group3");
alg.setProperty("Params", "0.1, 0.1, 2.6");
alg.setProperty("StartOverlaps", "0.8, 1.6");
alg.setProperty("EndOverlaps", "1.1, 1.9");
alg.setProperty("UseManualScaleFactor", "1");
alg.setProperty("ManualScaleFactor", 1.0);
alg.setProperty("ScaleFactorFromPeriod", 1);
alg.setPropertyValue("OutputWorkspace", "outws");
alg.execute();
// Test output ws
Workspace_sptr outws = alg.getProperty("OutputWorkspace");
auto group = AnalysisDataService::Instance().retrieveWS<WorkspaceGroup>("outws");
auto stitched =
boost::dynamic_pointer_cast<MatrixWorkspace>(group->getItem(0));
// Test the algorithm histories
std::vector<std::string> histNames;
auto histories = stitched->history().getAlgorithmHistories();
for (auto &hist : histories) {
histNames.push_back(hist->name());
TS_ASSERT_EQUALS(histNames[0], "CreateWorkspace");
TS_ASSERT_EQUALS(histNames[1], "CreateWorkspace");
TS_ASSERT_EQUALS(histNames[2], "GroupWorkspaces");
// Clear the ADS
AnalysisDataService::Instance().clear();
}
};
#endif /* MANTID_ALGORITHMS_STITCH1DMANYTEST_H_ */