added example config file for ips-fastran tool

# ======================================================================

# SIMULATION INFO SECTION

# ======================================================================

RUN_ID = fastran

TOKAMAK_ID = FPP

# SHOT_NUMBER =

# TIME_ID =

SIM_NAME = ${RUN_ID}_${SHOT_NUMBER}

OUTPUT_PREFIX =

LOG_FILE = run.log

LOG_LEVEL = DEBUG

INPUT_DIR_SIM = ${PWD}/input

SIM_ROOT = ${PWD}/SCAN

RUN_COMMENT = Template

TAG =

SIMULATION_MODE = NORMAL

RESTART_TIME =

RESTART_ROOT = ${SIM_ROOT}

USE_PORTAL = True

PORTAL_URL = http://lb.ipsportal.production.svc.spin.nersc.org

# ======================================================================

# PLASMA STATE SECTION

# ======================================================================

STATE_WORK_DIR = ${SIM_ROOT}/work/plasma_state

CURRENT_STATE = s${SHOT_NUMBER}.${TIME_ID}

CURRENT_EQDSK = g${SHOT_NUMBER}.${TIME_ID}

CURRENT_INSTATE = i${SHOT_NUMBER}.${TIME_ID}

CURRENT_BC = b${SHOT_NUMBER}.${TIME_ID}

STATE_FILES = ${CURRENT_STATE} ${CURRENT_EQDSK} ${CURRENT_INSTATE} ${CURRENT_BC}

# ======================================================================

# PORTS SECTION

# ======================================================================

[PORTS]

#   NAMES = INIT DRIVER EQ0 TR0 BC0 #EQ NB IC HC TR BC

#   PREPROCESS = # EQ0 TR0 BC0

#   POSTPROCESS =

    NAMES = INIT DRIVER EQ0 HCD0 TR0 BC0

    PREPROCESS =

    POSTPROCESS =

    # DRIVER and INIT

    [[DRIVER]]

        IMPLEMENTATION = fastran_driver

    [[INIT]]

        IMPLEMENTATION = fastran_init

    # Physics ports

    [[TR0]]

        IMPLEMENTATION = fastran0

    [[TR]]

        IMPLEMENTATION = fastran

    [[EQ0]]

        IMPLEMENTATION = efit0

    [[EQ]]

        IMPLEMENTATION = efit

    [[EC]]

        IMPLEMENTATION = toray

    [[HC]]

        IMPLEMENTATION = genray_hc

    [[LH]]

        IMPLEMENTATION = genray_lh

    [[IC]]

        IMPLEMENTATION = hcd_model

    [[NB]]

        IMPLEMENTATION = nfreya

#       IMPLEMENTATION = nubeam

    [[HCD0]]

        IMPLEMENTATION = hcd_model

    [[BC0]]

        IMPLEMENTATION = modeleq_constraint

#       IMPLEMENTATION = constraint_current0

    [[BC]]

        IMPLEMENTATION = constraint_current

    [[FEEDBACK]]

        IMPLEMENTATION = constraint_feedback

    [[POST]]

        IMPLEMENTATION = fastran1

    # Monitor ports

    [[MONITOR]]

        IMPLEMENTATION = monitor

# ======================================================================

# COMPONENT CONFIGURATION SECTION

# ======================================================================

[fastran_init]

    CLASS = fastran

    SUB_CLASS = init

    NAME = fastran_init

    MODULE = fastran.driver.fastran_init

    SCRIPT =

    NPROC = 1

    BIN_PATH =

    BIN =

    INPUT_DIR = ${INPUT_DIR_SIM}

    INIT_METHOD = instate

    INSTATE_METHOD = model

    INSTATE = instate

#   INGEQDSK = ingeqdsk

    INPUT_FILES = ${INSTATE} #${INGEQDSK}

    OUTPUT_FILES =

    RESTART_FILES =

[fastran_driver]

    CLASS = fastran

    SUB_CLASS = driver

    NAME = fastran_driver

    MODULE = fastran.driver.fastran_driver

    SCRIPT =

    NPROC = 1

    BIN_PATH =

    BIN =

    INPUT_DIR = ${INPUT_DIR_SIM}

    INPUT_FILES =

    OUTPUT_FILES =

    RESTART_FILES =

    SUMMARY = ${PWD}/summary

[fastran0]

    CLASS = fastran

    SUB_CLASS = tr0

    NAME = fastran

    MODULE = fastran.solver.fastran

    SCRIPT =

    NPROC = 1

    NPROC_KY = 1

    BIN_PATH = ${FASTRAN_BIN_DIR}

    BIN = ${FASTRAN_SERIAL_BIN_NAME}

    INPUT_DIR = ${INPUT_DIR_SIM}

    INFASTRAN = infastran0

    INPUT_FILES = ${INFASTRAN} intglf

    OUTPUT_FILES = fastran.nc inprof inmetric infastran intglf xfastran.log ${CURRENT_INSTATE}

    RESTART_FILES =

    RELAX = 1.0

#   USE_INSTATE = YES

    PS_BACKEND = instate

[fastran]

    CLASS = fastran

    SUB_CLASS = tr

    NAME = fastran

    SCRIPT =

    MODULE = fastran.solver.fastran

    NPROC = 1 # 32

    NPROC_KY = 1 # 8

    BIN_PATH = ${FASTRAN_BIN_DIR}

#   BIN = ${FASTRAN_BIN_NAME}

    BIN = ${FASTRAN_SERIAL_BIN_NAME}

    INPUT_DIR = ${INPUT_DIR_SIM}

    INFASTRAN = infastran

    INPUT_FILES = ${INFASTRAN} intglf

    OUTPUT_FILES = fastran.nc inprof inmetric infastran intglf xfastran.log ${CURRENT_INSTATE}

    RESTART_FILES =

    RELAX = 0.25

    USE_INSTATE = YES

[fastran1]

    CLASS = fastran

    SUB_CLASS = post

    NAME = fastran

    MODULE = fastran.solver.fastran

    SCRIPT =

    NPROC = 32

    NPROC_KY = 8

    BIN_PATH = ${FASTRAN_BIN_DIR}

    BIN = ${FASTRAN_BIN_NAME}

    INFASTRAN = infastran1

    INPUT_DIR = ${INPUT_DIR_SIM}

    INPUT_FILES = ${INFASTRAN} intglf

    OUTPUT_FILES = fastran.nc inprof inmetric infastran intglf xfastran.log ${CURRENT_INSTATE}

    RESTART_FILES =

    RELAX = 1.0

    USE_INSTATE = YES

[efit0]

    CLASS = fastran

    SUB_CLASS = eq0

    NAME = efit

    MODULE = fastran.equilibrium.efit

    SCRIPT =

    NPROC = 1

    BIN_PATH = ${EFIT_BIN_DIR}

    BIN = ${EFIT_BIN_NAME} 129 129

    INPUT_DIR = ${INPUT_DIR_SIM}

    INSTATE = instate

    INPUT_FILES = ${INSTATE}

    OUTPUT_FILES = g*.* a*.* m*.* k*.* efit.log s*.*

    RESTART_FILES =

    INIT_RUN = 1

    INIT_RUN_STEP = 0

    NITER = 10

#   PRESSURE = 'total'

    PRESSURE = 'kinetic'

    TOPOLOGY = DN #LSN USN DN

    SCALE_GS = 1

    R0_scale = 1.7

    B0_scale = 2.0

    SERIAL = 1

    PS_BACKEND = INSTATE

[efit]

    CLASS = fastran

    SUB_CLASS = eq

    NAME = efit

    MODULE = fastran.equilibrium.efit

    SCRIPT =

    NPROC = 1

    BIN_PATH = ${EFIT_BIN_DIR}

    BIN = ${EFIT_BIN_NAME} 129 129

    INPUT_DIR = ${INPUT_DIR_SIM}

    INSTATE = instate

    INPUT_FILES = ${INSTATE}

    OUTPUT_FILES = g*.* a*.* m*.* k*.* efit.log s*.*

    RESTART_FILES =

    INIT_RUN = 0

    INIT_RUN_STEP = 0

    NITER = 10

#   PRESSURE = 'total'

    PRESSURE = 'kinetic'

    TOPOLOGY = DN #LSN USN DN

    SCALE_GS = 1

    R0_scale = 1.7

    B0_scale = 2.0

    SERIAL = 1

[nubeam]

    CLASS = fastran

    SUB_CLASS = nb

    NAME = nubeam

    MODULE = fastran.heating.nubeam

    SCRIPT =

    NPROC = 24

    BIN_PATH = ${NUBEAM_BIN_DIR}

    BIN = ${NUBEAM_BIN_NAME}

    PREACT = ${DATA_DIR}/nubeam/PREACT

    ADAS = ${DATA_DIR}/nubeam/ADAS

    INPUT_DIR = ${INPUT_DIR_SIM}

    INPUT_FILES = innubeam

    OUTPUT_FILES = log.nubeam* state_changes.cdf

    RESTART_FILES = *.cdf *.dat nubeam_comp_exec.RUNID

    COPY_PREACT = 0

    FREEZE = -1

    RESUME = -1

[toray]

    CLASS = fastran

    SUB_CLASS = ec

    NAME = toray

    MODULE = fastran.heating.toray

    SCRIPT =

    NPROC = 1

    BIN_PATH = ${TORAY_BIN_DIR}

    BIN = ${TORAY_BIN_NAME}

    INPUT_DIR = ${INPUT_DIR_SIM}

    INPUT_FILES = intoray

    OUTPUT_FILES = toray*.nc

    RESTART_FILES =

[genray_hc]

    CLASS = fastran

    SUB_CLASS = hc

    NAME = genray

    MODULE = fastran.heating.genray

    SCRIPT =

    NPROC = 1

    BIN_PATH = ${GENRAY_BIN_DIR}

    BIN = $GENRAY_BIN_NAME

    INPUT_DIR = ${INPUT_DIR_SIM}

    INGENRAY = ingenray_HC

    INPUT_FILES = ${INGENRAY}

    OUTPUT_FILES = genray.nc xgenray.log

    UNIT = #MKS

    RESTART_FILES =

    ADD = 1

    IMODE = IC

    RHO_SMOOTH = 0.1

    SERIAL = 1

[genray_lh]

    CLASS = fastran

    SUB_CLASS = lh

    NAME = genray

    MODULE = fastran.heating.genray

    SCRIPT =

    NPROC = 1

    BIN_PATH = ${GENRAY_BIN_DIR}

    BIN = ${GENRAY_BIN_NAME}

    INPUT_DIR = ${INPUT_DIR_SIM}

    INGENRAY = ingenray_LH

    INPUT_FILES = ${INGENRAY}

    OUTPUT_FILES = genray.nc xgenray.log

    RESTART_FILES =

    UNIT = MKS

    ADD = 0

    IMODE = LH

    SERIAL = 1

[nfreya]

    CLASS = fastran

    SUB_CLASS = nb

    NAME = nfreya

    SCRIPT =

    MODULE = fastran.heating.nfreya

    NPROC = 1

    BIN_PATH = ${NFREYA_BIN_PATH}

    BIN = ${NFREYA_BIN_NAME}

    INPUT_DIR = ${INPUT_DIR_SIM}

    INPUT_FILES = innfreya

    OUTPUT_FILES = outone

    RESTART_FILES =

    DIR_DATA = ${NFREYA_DATA_ROOT}

    UPDATE_STATE = 1

#   PS_BACKEND = INSTATE

#   FEEDBACK = 1

[hcd_model]

    CLASS = fastran

    SUB_CLASS = ic

    NAME = hcd_model

    MODULE = fastran.heating.hcd_model

    SCRIPT =

    NPROC = 1

    BIN_PATH =

    BIN =

    INPUT_DIR = ${INPUT_DIR_SIM}

    INPUT_FILES = inhcd

    OUTPUT_FILES =

    RESTART_FILES =

    ADD = 0

    PS_BACKEND = INSTATE

[constraint_current0]

    CLASS = fastran

    SUB_CLASS = pre

    NAME = constraint_current

    SCRIPT =

    MODULE = fastran.constraint.constraint_current

    NPROC = 1

    BIN_PATH =

    BIN =

    INPUT_DIR = ${INPUT_DIR_SIM}

    INPUT_FILES =

    OUTPUT_FILES =

    RESTART_FILES =

    METHOD = broadJ

    RHO_J = 0.65

    JAXIS = 0.6

    RHO_JBDRY = 0.85

[constraint_current]

    CLASS = fastran

    SUB_CLASS = pre

    NAME = constraint_current

    SCRIPT =

    MODULE = fastran.constraint.constraint_current

    NPROC = 1

    BIN_PATH =

    BIN =

    INPUT_DIR = ${INPUT_DIR_SIM}

    INPUT_FILES =

    OUTPUT_FILES =

    RESTART_FILES =

    METHOD = broadJ

    RHO_J = 0.65

    JAXIS = 0.6

    RHO_JBDRY = 0.85

[modeleq_constraint]

    CLASS = fastran

    SUB_CLASS =

    NAME = modeleq_constraint

    MODULE = fastran.driver.modeleq_constraint

    SCRIPT =

    NPROC = 1

    BIN_PATH =

    BIN =

    INPUT_DIR = $INPUT_DIR_SIM

    INFASTRAN =

    INPUT_FILES =

    OUTPUT_FILES =

    RESTART_FILES =

    PS_UPDATE = enabled

[monitor]

    CLASS = monitor

    SUB_CLASS =

    NAME = monitor

    SCRIPT =

    MODULE = fastran.monitor.monitor

    NPROC = 1

    BIN_PATH =

    BIN =

    INPUT_DIR =

    INPUT_FILES =

    OUTPUT_FILES =

    RESTART_FILES =

# =============================================================================

# ITERATION LOOP SECTION

# =============================================================================

[ITERATION_LOOP]

    MODE = REGULAR

    NSTEP = 10 # 20