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ecpcitest
chm137
spinifel
Commits
feb8b607
Commit
feb8b607
authored
1 year ago
by
Monarin Uervirojnangkoorn
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test script for running legion demo23
parent
b0c79b1d
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Pipeline
#438787
canceled
1 year ago
Stage: build
Stage: unit_test
Stage: test
Stage: cleanup
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#!/bin/bash -x
export
OUT_DIR_LEGION
=
"/lustre/orion/proj-shared/chm137/
${
USER
}
/spinifel_output_frontier_opt"
export
USE_CUPY
=
1
export
test_data_dir
=
"/lustre/orion/proj-shared/chm137/"
export
OPTIONS
=
"legion_python -ll:pyomp 4 -ll:py 1 -level runtime=5 -ll:csize 8192 -gex:amlimit 32 legion_main.py --default-settings=multiple_conform.toml --mode=legion runtime.N_images_per_rank=1000 algorithm.N_generations=10 runtime.chk_convergence=false runtime.cupy_mempool_clear=false debug.verbosity=0 algorithm.N_conformations=2 algorithm.conformation_mode=max_likelihood algorithm.max_intensity_clip=2.5 debug.show_image=false"
t_start
=
`
date
+%s
`
source
setup/env.sh
export
LEGION_BACKTRACE
=
1
export
REALM_BACKTRACE
=
1
export
PS_PARALLEL
=
'legion'
export
PS_SMD_N_EVENTS
=
1000
export
USE_CUPY
=
1
export
FI_MR_CACHE_MONITOR
=
memhooks
export
FI_CXI_RX_MATCH_MODE
=
software
export
GASNET_OFI_DEVICE_0
=
cxi2
export
GASNET_OFI_DEVICE_1
=
cxi1
export
GASNET_OFI_DEVICE_2
=
cxi3
export
GASNET_OFI_DEVICE_3
=
cxi0
export
GASNET_OFI_DEVICE_TYPE
=
Node
export
GASNET_OFI_RECEIVE_BUFF_SIZE
=
single
default_options
=
""
options
=
${
OPTIONS
:
=
"
${
default_options
}
"
}
OUT_DIR_LEGION
=
${
OUT_DIR_LEGION
:
=
"
${
SCRATCH
}
/spinifel_output_legion"
}
echo
$OUT_DIR_LEGION
echo
$options
export
out_dir
=
"
${
OUT_DIR_LEGION
}
"
mkdir
-p
$OUT_DIR_LEGION
ntasks_per_node
=
8
echo
'Running Spinifel Legion with Multiple Conformations'
for
n
in
$SLURM_JOB_NUM_NODES
;
do
ntasks
=
$((
n
*
8
))
echo
"Ranks: "
$ntasks
" "
echo
"Options: "
$options
" "
OUT_DIR_LEGION
=
"
${
OUT_DIR_LEGION
}
/result_
${
ntasks
}
tasks"
echo
"out_dir: "
$OUT_DIR_LEGION
" "
mkdir
-p
$OUT_DIR_LEGION
srun
-N
$n
-n
$ntasks
-c7
--gpus-per-task
1
--gpu-bind
=
single:1
$options
runtime.use_pygpu
=
true
data.out_dir
=
"
${
OUT_DIR_LEGION
}
"
echo
'Finished Legion'
t_end
=
`
date
+%s
`
echo
PSJobCompleted TotalElapsed
$((
t_end-t_start
))
$t_start
$t_end
done
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