Initial commit w/ soil modeling tools

# Galaxy Tools

This is the repo for Galaxy tools that we create within the neutrons project. At the deployment stage, the tools from this repo will be added to Galaxy.

This is the repo for Galaxy tools that we create within the BESSD project.

At the deployment stage, the tools from this repo will be added to Galaxy.

## Project Structure

## Installing to Galaxy

### Copying files

 - copy `tools/neutrons` to a local tools folder. E.g. to a default location of Galaxy tools `$GALAXY_ROOT/tools`

 - copy `tools/bessd` to a local tools folder. E.g. to a default location of Galaxy tools `$GALAXY_ROOT/tools`

 - copy `tool-data` content to `$GALAXY_ROOT/tool-data` (or to an alternative location of tool-data configured in galaxy.yml)

### Updating tool_conf.xml and tool_data_table.conf

SNS	Wide Angular-Range Chopper Spectrometer	ARCS	ARCS

SNS	Backscattering Spectrometer	BSS	BASIS

SNS	Cold Neutron Chopper Spectrometer	CNCS	CNCS

SNS	Elastic Diffuse Scattering Spectrometer	CORELLI	CORELLI

SNS	Extended Q-Range Small-Angle Neutron Scattering Difffractometer	EQSANS	EQ-SANS

SNS	Hybrid Spectrometer	HYS	HYSPEC

SNS	Macromolecular Neutron Diffractometer	MANDI	MANDI

SNS	Nanoscale-Ordered Materials Diffractometer	NOM	NOMAD

SNS	nED on Wheels 2	NOW2	NOW2

SNS	nED on Wheels 4	NOW4	NOW4

SNS	None	NOWB	None

SNS	Powder Diffractometer	PG3	POWGEN

SNS	Liquids Reflectometer	REF_L	LIQREF

SNS	Magnetism Reflectometer	REF_M	MAGREF

SNS	Fine-Resolution Fermi Chopper Spectrometer	SEQ	SEQUOIA

SNS	Spallation Neutrons and Pressure Diffractometer	SNAP	SNAP

SNS	Single-Crystal Diffractometer	TOPAZ	TOPAZ

SNS	Ultra-Small-Angle Neutron Scattering Instrument	USANS	USANS

SNS	Versatile Neutron Imaging Instrument	VENUS	VENUS

SNS	Vibrational Spectrometer	VIS	VISION

SNS	Engineering Materials Diffractometer	VULCAN	VULCAN

HFIR	Instrument Development Beam Line	CG1B	DEV BEAM

HFIR	Neutron Imaging Facility	CG1D	IMAGING

HFIR	General-Purpose Small-Angle Neutron Scattering Diffractometer	CG2	GP-SANS

HFIR	Biological Small-Angle Neutron Scattering Instrument	CG3	BIO-SANS

HFIR	Cold Neutron Triple-Axis Spectrometer	CG4C	CTAX

HFIR	Polarized Triple-Axis Spectrometer	HB1	PTAX

HFIR	Fixed-Incident-Energy Triple-Axis Spectrometer	HB1A	FIE-TAX

HFIR	Neutron Powder Diffractometer	HB2A	POWDER

HFIR	High Intensity Diffractometer for Residual stress Analysis	HB2B	HIDRA

HFIR	Wide-Angle Neutron Diffractometer	HB2C	WAND2

HFIR	Triple-Axis Spectrometer	HB3	TAX

HFIR	Dimensional Extreme Magnetic Neutron Diffractometer	HB3A	DEMAND

import pyoncat

import argparse

ONCAT_URL = "https://oncat.ornl.gov"

oncat = pyoncat.ONCat(ONCAT_URL)

instruments = oncat.Instrument.list(facility="SNS")

for i in instruments:

	print("%s,%s,%s,%s" % (i.get("facility"), i.get("full_name"), i.get("name"), i.get("short_name")))

instruments = oncat.Instrument.list(facility="HFIR")

for i in instruments:

	print("%s,%s,%s,%s" % (i.get("facility"), i.get("full_name"), i.get("name"), i.get("short_name")))

SNS	Wide Angular-Range Chopper Spectrometer	ARCS	ARCS

SNS	Fine-Resolution Fermi Chopper Spectrometer	SEQ	SEQUOIA

HFIR	General-Purpose Small-Angle Neutron Scattering Diffractometer	CG2	GP-SANS