Commits · main · Alexander Public / MIJAMP

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Sep 22, 2025
- Fixed issue where motif fails on 0 methyated datasets · d6a575d3
  Alexander, William authored Sep 22, 2025
  d6a575d3
Aug 11, 2025
- Lines 353-355: added kmer length check · 271e4801
  Alexander, William authored Aug 11, 2025
  
  271e4801
May 08, 2025
- Edit README.md · 415ed4f2
  Alexander, William authored May 08, 2025
  
  415ed4f2
- Edit README.md · bd4cd448
  Alexander, William authored May 08, 2025
  
  bd4cd448
- Added an NB about the preprocess threads switch · cca71466
  Alexander, William authored May 08, 2025
  
  cca71466
Mar 31, 2025
- Merge branch 'bug/div0' into 'main' · c426765a
  Alexander, William authored Mar 31, 2025
  c426765a
Mar 25, 2025
- Lines 218-221: added logic to remedy divide-by-zero woes · 733604a9
  Alexander, William authored Mar 25, 2025
  
  733604a9
Mar 13, 2025
- Edit README.md · bf226fd9
  Alexander, William authored Mar 13, 2025
  
  bf226fd9
- Corrected precise name to invoke command modules in walkthrough, i.e. "motif" vs "motif.py" · 100126c6
  Alexander, William authored Mar 13, 2025
  
  100126c6
Jan 14, 2025
- Updated bioRXiv URL to most recent version · d961fe41
  Alexander, William authored Jan 14, 2025
  
  d961fe41
Jan 11, 2025
- Update README.md to include reason for AMD exclusivity. · aba994a3
  Alexander, William authored Jan 11, 2025
  
  aba994a3
Jan 07, 2025
- Update README.md License information · 923bffe8
  Alexander, William authored Jan 07, 2025
  
  923bffe8
- Update README.md to include warning about Apple Silicon devices and Docker · a73ab6fe
  Alexander, William authored Jan 07, 2025
  
  a73ab6fe
Dec 19, 2024
- Added Docker build and setup instructions · 9ba5a97e
  Alexander, William authored Dec 19, 2024
  
  9ba5a97e
- Update 12 files · 246171da
  Alexander, William authored Dec 19, 2024
  246171da
Dec 17, 2024
- Added sampleSize arg to memeLoop calls · 2d6361ca
  Alexander, William authored Dec 17, 2024
  
  2d6361ca
- Updated for multithreading MEME; allows control of threads used and sample sized passed · 601cb94d
  Alexander, William authored Dec 17, 2024
  
  601cb94d
- Delete ID_extractor.py, unnecessary · 10e46463
  Alexander, William authored Dec 17, 2024
  
  10e46463
- Update 8 files · c419ea42
  Alexander, William authored Dec 17, 2024
  c419ea42
- Add new directory · 3bf6eb16
  Alexander, William authored Dec 17, 2024
  
  3bf6eb16
- Add new directory · 7c20d350
  Alexander, William authored Dec 17, 2024
  
  7c20d350
Dec 16, 2024
- Altered shabang · 1aae06ca
  Alexander, William authored Dec 16, 2024
  
  1aae06ca
- Altered shabang · f45a3dcd
  Alexander, William authored Dec 16, 2024
  
  f45a3dcd
- Altered shabang · 33157b48
  Alexander, William authored Dec 16, 2024
  
  33157b48
- Altered shabang · b72b2cc2
  Alexander, William authored Dec 16, 2024
  
  b72b2cc2
Dec 04, 2024
- Add LICENSE · cb22af50
  Alexander, William authored Dec 04, 2024
  
  cb22af50
- Delete LICENSE · c79eff58
  Alexander, William authored Dec 04, 2024
  
  c79eff58
Oct 09, 2024
- Update requirements.txt · 70f5b465
  Alexander, William authored Oct 09, 2024
  
  70f5b465
Aug 26, 2024
- Fixed bug in query.py where 0 was not being taken as a valid index · 5a06b44c
  Alexander, William authored Aug 26, 2024
  
  5a06b44c
Aug 21, 2024
- Upload New File · d0fa0e2c
  Alexander, William authored Aug 21, 2024
  
  d0fa0e2c
- Update README.md · 20116c80
  Alexander, William authored Aug 21, 2024
  
  20116c80
Aug 15, 2024
- Upload New File · 970224cf
  Alexander, William authored Aug 15, 2024
  
  970224cf
- Upload New File · ce9f96b3
  Alexander, William authored Aug 15, 2024
  
  ce9f96b3
- Add Picosynecococcus sp. PCC7002 data · 2c0db602
  Alexander, William authored Aug 15, 2024
  
  2c0db602
- Update README.md · a9a24124
  Alexander, William authored Aug 15, 2024
  
  a9a24124
- Update README.md · 3d3f4f05
  Alexander, William authored Aug 15, 2024
  
  View commits for tag 0.2.0 0.2.0
  3d3f4f05
- Update README.md · 25ce048d
  Alexander, William authored Aug 15, 2024
  
  25ce048d
Aug 14, 2024
- Update file motif.py · 8e8092c2
  Alexander, William authored Aug 14, 2024
  
  8e8092c2
- Upload New File · fa886c30
  Alexander, William authored Aug 14, 2024
  
  fa886c30
- Update README.md · dd8b583b
  Alexander, William authored Aug 14, 2024
  
  dd8b583b

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