Commit bd4cd448 authored by Alexander, William's avatar Alexander, William
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Edit README.md

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README.md

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@@ -42,7 +42,7 @@ $ preprocess -b Ecol_reads.bam -g Ecol_MG1655_genome.fasta -t # -o mijamp 


Once preprocessed, methylome discovery is performed with the `motif.py` script:

```

$ motif -f mijamp/ -t 30

$ motif -f mijamp/ -t #

```



Motif data can be found in the `output.tsv` file in the `mijamp/` folder. This output file should match the `expectedOutput.tsv` file present in this directory. Finally, determine the amount of data explained by this methylome using diagnostic.py: