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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% %
% ROOT FILE %
% %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% Run LaTeX or pdfLaTeX on this file to produce your thesis.
% To produce the abstract title page followed by the abstract,
% see the file abstitle-phd.tex or abstitle-mas.tex.
%
% author: Jesse Brown
%
% parts of the sammy_main.tex file were written by Brian McDermott (<2015)
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%\usepackage{thesis}
\documentclass[chap]{thesis}
% Use the first command below if you want captions over 1 line indented. A side
% effect of this is to remove the use of bold for captions.
% To restore bold, also include the second line below.
\usepackage{caption} % to indent subsequent lines of captions
\usepackage{graphicx}
\usepackage{array}
% \usepackage{tocloft}
\usepackage[nottoc]{tocbibind}
\usepackage{tabu}
\usepackage[table]{xcolor}
\usepackage[latin1]{inputenc}
\usepackage{amsmath}
\usepackage{amssymb}
\usepackage{amsfonts}
\usepackage{cancel}
\usepackage{graphicx}
\usepackage{booktabs}
\usepackage{pdflscape}
\usepackage{subfig}
\usepackage{mathtools}
%\usepackage{cite} % to have: Refs. 1-4 instead of Refs. 1,2,3,4
\usepackage{notoccite}
\usepackage{rotating}
\usepackage[final]{pdfpages}
\usepackage{listings}
\usepackage{algorithm}
\usepackage{algorithmicx}
\usepackage{multirow}
\usepackage[noend]{algpseudocode}
\usepackage{calrsfs}
\usepackage{lipsum}
\usepackage[hidelinks]{hyperref} % ,backref
\usepackage[all]{nowidow}
\usepackage{longtable}
\usepackage{enumitem}
\usepackage{tablefootnote}
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%\DeclareMathAlphabet{\pazocal}{OMS}{zplm}{m}{n}
\newcommand{\Ma}{\mathcal{M}}
\newcommand{\Mb}{\pazocal{M}}
\newcommand{\lambdabar}{{\mkern0.75mu\mathchar '26\mkern -9.75mu\lambda}}
\newcommand\numberthis{\addtocounter{equation}{1}\tag{\theequation}}
\renewcommand*\thetable{\arabic{chapter}.\arabic{table}}
\renewcommand{\captionfont}{\bfseries} % bold caption (needed with caption package to restore boldface.)
\newcommand\blfootnote[1]{%
\begingroup
\renewcommand\thefootnote{}\footnote{#1}%
\addtocounter{footnote}{-1}%
\endgroup
}
\newcommand{\mydiag}[1]{\left(%
\begin{array}{@{}c@{}c@{}c@{}}
\diagdown & & \\
& #1 & \\
& & \diagdown
\end{array}\right)
}
%\includeonly{} % use \includeonly to process only
% the file(s) listed inside the braces
\begin{document}
%\include{} % titlepage material
% \include{} % include for acknowledgements
\include{abstract} % abstract
\include{introduction}
\include{scattering-theory}
\include{multScat} % Section
\include{sammybib} % bibliography
% \bibliography{sammy_refs}
% \renewcommand*\thetable{\Alph{chapter}.\arabic{table}} % to get the tables to use chapter letters
% \include{} % appendix
\end{document}