Commit b9f0ffa2 authored by Tharrington, Arnold's avatar Tharrington, Arnold
Browse files

Fixed some logic errors in build_documentation.sh.

parent 8e9bf4e1

bin/build_documentation.sh

+18 −25
Original line number Diff line number Diff line 
#! /usr/bin/env bash



#cd ${NCP_TOP_LEVEL}/documentation

#make clean && make html

#if [[ $? != 0 ]]; then

#    echo "Failed to create documentation."

#    exit 1

#else

#    echo "Created documentation."

#fi



PROGNAME=$(basename ${0})



# ----------------------------------------------------

#

# Program notes.

#

# This program builds the documentation for

# namd-caar-reproducer.

# This program builds the documentation for namd-caar-reproducer.

#

# ----------------------------------------------------
@@ -25,7 +14,8 @@ PROGNAME=$(basename ${0}) 
#    declare_global_variables

#

# Synopsis:

#   Prints the usage of this bash function.

#   Declares global variables used in this script. Typically we declare the

#   global variables to store the command line argument values.

#

# Positional parameters:

#
@@ -73,12 +63,13 @@ function usage () { 
    printf "\n"

    printf "${help_frmt1}" "--publish-mode <PUBLISHMODE>"  "The mode of publishing the documentation."

    printf "${help_frmt1}" ""  "The following modes are available:"

    printf "${frmtmodes}" ""  "standard : Publishes documentation to ${NCP_TOP_LEVEL}/documentation/build/html."

    printf "${frmtmodes}" ""  "gitlab-pages : Publishes documentation for gitlab-page in ${NCP_TOP_LEVEL}/public/html"

    printf "${frmtmodes}" ""  "standard : Publishes documentation to \${NCP_TOP_LEVEL}/documentation/build/html."

    printf "${frmtmodes}" ""  "gitlab-pages : Publishes documentation for gitlab-page in \${NCP_TOP_LEVEL}/public/html"

    printf "\n"

    printf "${help_frmt1}" "--doc-top-level <DOCTOPLEVEL>"  "The directory DOCTOPLEVEL is where the top-level directory of the package"

    printf "${help_frmt1}" "" "docuementaion. This directory contains the file Makefile and the"

    printf "${help_frmt1}" "" "source sphinx directory."

    printf "${help_frmt1}" "" "documentation. This directory contains the files Makefile, make.bat and the"

    printf "${help_frmt1}" "" "sphinx directory 'source'. The standard location of <DOCTOPLEVEL> is "

    printf "${help_frmt1}" "" "\${NCP_TOP_LEVEL}/documentation/"

    printf "\n"

}
@@ -133,31 +124,33 @@ function parse_command_line { 
function publish_documentation {

    echo "Executing function publish_documentation"

 

    local -r my_doc_top_level=${1}

    local -r my_publish_mode=${2}  

    local -r my_start_dir=$(pwd)

    local -r my_publish_mode=${2}  

    local -r my_doc_top_level=${1}

    local -r my_source_dir="${my_doc_top_level}/source"

    local -r my_publish_dir="${NCP_TOP_LEVEL}/documentation/build"



    cd "${doc_top_level}"



    local my_publish_dir

    local -r my_source_dir="${my_doc_top_level}/source"

    while true;do

        case ${my_publish_mode} in



            standard )

                echo "Publishing in standard mode"

                my_publish_dir="${NCP_TOP_LEVEL}/documentation/build"

                SOURCEDIR="${my_source_dir}" PUBLISHDIR="${my_publish_dir}" make clean && SOURCEDIR="${my_source_dir}" PUBLISHDIR="${my_publish_dir}" make html 

                break;;



            gitlab-pages)

                echo "Publishes in gitlab-pages mode"

                my_publish_dir="${NCP_TOP_LEVEL}/public"

                echo "Publishing in gitlab-pages mode"

                local -r my_gitlab_publish_dir="${NCP_TOP_LEVEL}/public"

                SOURCEDIR="${my_source_dir}" PUBLISHDIR="${my_publish_dir}" make clean && SOURCEDIR=""${my_source_dir}"" PUBLISHDIR="${my_publish_dir}" make html 

                mkdir --parents "${my_gitlab_publish_dir}"

                rm -rf  "${my_gitlab_publish_dir}"

                mv --force "${NCP_TOP_LEVEL}/documentation/build/html" "${my_gitlab_publish_dir}"

                break;;



            * ) 

                echo "Internal parsing error publishing mode. This publishing mode is not implemented."

                echo "Internal parsing error for publishing mode. The publishing mode, ${my_publish_mode}, is not implemented."

                usage

                exit 1;;

        esac

runtime_environment/Crusher/Crusher_core_runtime_environment.lua

+0 −3
Original line number Diff line number Diff line
@@ -5,9 +5,6 @@ This module sets critical environmental and path variables needed for building 
and running NAMD on Crusher.

]])



local dummy_path = subprocess("ncp_paths.sh")

LmodMessage(dummy_path)



-- -------------------------------------------------

-- Set the set of modules to load by defining the variable

-- key.