Unverified Commit f53699e4 authored by Stephan Lachnit's avatar Stephan Lachnit
Browse files

doc: update object links 

Required for !813
parent c8c80899

doc/usermanual/07_objects/01_object_types.md

+52 −52
Original line number Diff line number Diff line
@@ -9,7 +9,7 @@ The list of currently supported objects is given below. A `typedef` is added to 
alternative name for the message which is directly indicating the carried object.



For writing analysis scripts, a detailed description of the code interface for each object can be found in the

[Object Group](https://allpix-squared.docs.cern.ch/reference/group__Objects.html) of the Doxygen reference manual

[Object Group](https://allpix-squared.docs.cern.ch/reference/classes/) of the Doxygen reference manual

\[[@ap2-doxygen]\].



## MCTrack
@@ -24,18 +24,18 @@ name, and the volume it took place in. Furthermore, the particle's PDG id \[[@pd 


Main properties:

- Global points where track came into and went out of existence

  ([`getStartPoint()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCTrack.html#a1bddb8af8c3f64067bf8767c5a435117),

   [`getEndPoint()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCTrack.html#a1ae55b27c872c7adfa6fd890f2f83195))

  ([`getStartPoint()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mctrack/#function-getstartpoint),

   [`getEndPoint()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mctrack/#function-getendpoint))

- Global time when the track had its first and last appearance

  ([`getGlobalStartTime()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCTrack.html#a913166027c8a2dec9ffba22361b289f1),

   [`getGlobalEndTime()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCTrack.html#a01377a4a6f447bc85b92e306da5989c3))

  ([`getGlobalStartTime()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mctrack/#function-getglobalstarttime),

   [`getGlobalEndTime()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mctrack/#function-getglobalendtime))

- Initial and final kinetic and total energy

  ([`getKineticEnergyInitial()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCTrack.html#a9998511439c665d777d65779f9f9dcdf),

   [`getTotalEnergyInitial()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCTrack.html#a25c481bd56d0c2ab8ba15c4292c8ecc7),

   [`getKineticEnergyFinal()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCTrack.html#a40419d59795984f813e0611205af6740),

   [`getTotalEnergyFinal()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCTrack.html#adfb09b0a238968fb728a3668d67f739e))

  ([`getKineticEnergyInitial()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mctrack/#function-getkineticenergyinitial),

   [`getTotalEnergyInitial()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mctrack/#function-gettotalenergyinitial),

   [`getKineticEnergyFinal()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mctrack/#function-getkineticenergyfinal),

   [`getTotalEnergyFinal()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mctrack/#function-gettotalenergyfinal))



For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCTrack.html).

For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mctrack/).



## MCParticle
@@ -57,23 +57,23 @@ time measurement references the entry point of the *first* MCParticle of the eve 


Main parameters:

- Entry and exit points of the particle in the sensor in local and global coordinates

  ([`getLocalStartPoint()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCParticle.html#a3ab0b177b8b64535057d98bd3238cae3),

   [`getGlobalStartPoint()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCParticle.html#a2f6a661fe23e0fcc102af99fe044db5a),

   [`getLocalEndPoint()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCParticle.html#a7bf3fe84684c26be72cdf2442b986fe8),

   [`getGlobalEndPoint()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCParticle.html#a1529985658a12ea1c26bed764dec001d))

  ([`getLocalStartPoint()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mcparticle/#function-getlocalstartpoint),

   [`getGlobalStartPoint()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mcparticle/#function-getglobalstartpoint),

   [`getLocalEndPoint()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mcparticle/#function-getlocalendpoint),

   [`getGlobalEndPoint()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mcparticle/#function-getglobalendpoint))

- The arrival time of the particle in the sensor in local and global coordinates

  ([`getLocalTime()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCParticle.html#a354c07df3e02198e7b2a6d856765d2c5),

   [`getGlobalTime()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCParticle.html#ac50facfceaf33ebdc7199085ec3549f7))

  ([`getLocalTime()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mcparticle/#function-getlocaltime),

   [`getGlobalTime()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mcparticle/#function-getglobaltime))

- PDG id for this particle type

  ([`getParticleID()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCParticle.html#a940f894b9773e58eed588acd85712bd4))

  ([`getParticleID()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mcparticle/#function-getparticleid))

- If the particle is a primary particle or has a parent particle

  ([`isPrimary()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCParticle.html#a7cc9e9f4ace629928a34c5e3f72d5efa)),

  ([`isPrimary()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mcparticle/#function-getprimary)),

  and the parent particle, if any

  ([`getParent()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCParticle.html#a8985cb34f41e91cf6f193ac72b9f0ed3))

  ([`getParent()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mcparticle/#function-getparent))

- The track the particle is related to, if any

  ([`getTrack()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCParticle.html#a997b124cb9020557ffb8bf18620eb970))

  ([`getTrack()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mcparticle/#function-gettrack))



For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCParticle.html).

For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1mcparticle/).



## SensorCharge
@@ -82,19 +82,19 @@ This is a meta class for a set of charges within a sensor. The properties of thi 


Main parameters:

- The position of the set of charges in the sensor in local and global coordinates

  ([`getLocalPosition()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1MCParticle.html#a3ab0b177b8b64535057d98bd3238cae3),

   [`getGlobalPosition()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1SensorCharge.html#adcf461c7b657982725c8abad6ff74ac4))

  ([`getLocalPosition()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1sensorcharge/#function-getlocalposition),

   [`getGlobalPosition()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1sensorcharge/#function-getglobalposition))

- The associated time of the set of charges in local and global coordinates

  ([`getLocalTime()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1SensorCharge.html#a365ea8e1f752290ffba385a5fdd0d52d),

   [`getGlobalTime()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1SensorCharge.html#ad42d8e19a3e01bf9204d002ec9370018))

  ([`getLocalTime()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1sensorcharge/#function-getlocaltime),

   [`getGlobalTime()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1sensorcharge/#function-getglobaltime))

- The sign of the charge carries

  ([`getSign()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1SensorCharge.html#a70e90b3397690567c5e5e98b441108d6))

  ([`getSign()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1sensorcharge/#function-getsign))

  and the amount of charges in the set

  ([`getCharge()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1SensorCharge.html#adab95a4c287dc8b3ae106e07a22214f6))

  ([`getCharge()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1sensorcharge/#function-getcharge))

- The carrier type to check if the charge carriers are electrons or holes

  ([`getType()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1SensorCharge.html#a903e762bc987c43fe1e8128f400e4ea3))

  ([`getType()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1sensorcharge/#function-gettype))



For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1SensorCharge.html).

For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1sensorcharge/).



## DepositedCharge
@@ -106,9 +106,9 @@ carrier (electron or hole) is stored. 
Main parameters:

- Everything from [SensorCharge](#sensorcharge)

- The [MCParticle](#mcparticle) that created the deposited charge

  ([`getMCParticle()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1DepositedCharge.html#a371c2f081846e00b6ea5aaaba049dbb7))

  ([`getMCParticle()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1depositedcharge/#function-getmcparticle))



For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1DepositedCharge.html).

For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1depositedcharge/).



## PropagatedCharge
@@ -121,11 +121,11 @@ also be stored. 
Main parameters:

- Everything from [SensorCharge](#sensorcharge)

- The associated [DepositedCharge](#depositedcharge) object

  ([`getDepositedCharge()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PropagatedCharge.html#a2faa699e53a1809e645d0556ce924345))

  ([`getDepositedCharge()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1propagatedcharge/#function-getdepositedcharge))

- The associated induced pulses, if any

  ([`getPulses()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PropagatedCharge.html#a6dfb809cfda7bab0893292c4861e85d3))

  ([`getPulses()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1propagatedcharge/#function-getpulses))

- The carrier state of the charge carriers described below

  ([`getState()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PropagatedCharge.html#ac14ea433405562d18a6113948707552f))

  ([`getState()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1propagatedcharge/#function-getstate))



The following values for the carrier state are possible:

- `CarrierState::UNKNOWN`:
@@ -141,7 +141,7 @@ The following values for the carrier state are possible: 
- `CarrierState::HALTED`:

  The motion of the charge carrier has stopped, for example because it has reached an implant or the sensor surface



For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PropagatedCharge.html).

For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1propagatedcharge/).



## PixelCharge
@@ -151,21 +151,21 @@ the individual charges can be retrieved from the related [PropagatedCharge](#pro 


Main parameters:

- The pixel corresponding to the charge

  ([`getPixel()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelCharge.html#ab511f3005b3893a0496a8f1623ddde1f))

  ([`getPixel()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelcharge/#function-getpixel))

  and its index

  ([`getIndex()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelCharge.html#a8c24718e64e7e49a84893a1b60b04696))

  ([`getIndex()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelcharge/#function-getindex))

- The charge collected in the pixel

  ([`getCharge()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelCharge.html#a3aaf82b5ca4439c17614536ff668d569),

   [`getAbsoluteCharge()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelCharge.html#af767e1d8b8672c5628093a1491f83da5))

  ([`getCharge()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelcharge/#function-getcharge),

   [`getAbsoluteCharge()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelcharge/#function-getabsolutecharge))

- The related [propagates charges](#propagatedcharge)

  ([`getPropagatedCharges()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelCharge.html#af7edef4aaa932efb3552939a912e3751))

  ([`getPropagatedCharges()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelcharge/#function-getpropagatedcharges))

- The associated time of the charge in local and global coordinates

  ([`getLocalTime()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelCharge.html#adbfb1bceab6b1f5fcc9d2761689c1565),

   [`getGlobalTime()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelCharge.html#a14db92143cf86e53ecd1e17fae6b797c))

  ([`getLocalTime()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelcharge/#function-getlocaltime),

   [`getGlobalTime()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelcharge/#function-getglobaltime))

- The recorded charge pulse, if any

  ([`getPulse()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelCharge.html#a49f7cf79b556b7744fc9234c7252be4c))

  ([`getPulse()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelcharge/#function-getpulse))



For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelCharge.html).

For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelcharge/).



## PixelHit
@@ -179,21 +179,21 @@ The exact type of the time and signal values depends on the digitizer module use 


Main parameters:

- The pixel corresponding to the hit

  ([`getPixel()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelHit.html#a1da68ec967f329bc389024fc6967c4ad))

  ([`getPixel()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelhit/#function-getpixel))

  and its index

  ([`getIndex()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelHit.html#a0859f268a4f7a69aad7ca6cce742f03b))

  ([`getIndex()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelhit/#function-getindex))

- The related [PixelCharge](#pixelcharge)

  ([`getPixelCharge()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelHit.html#a3c0794a68c71e930913438f151afcf66))

  ([`getPixelCharge()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelhit/#function-getpixelcharge))

  and PixelPulse, if any

  ([`getPixelPulse()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelHit.html#a2cb314929cced5f6f82ebe7e4a3016bd))

  ([`getPixelPulse()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelhit/#function-getpixelpulse))

- The signal of the hit

  ([`getSignal()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelHit.html#ae9fc38ec4d0aa41aff2eb019ce2ce236))

  ([`getSignal()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelhit/#function-getsignal))

- The time information of the hit in local and global coordinates

  ([`getLocalTime()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelHit.html#a99fad43a7ba5d87f7f774d26d81c7dc2),

   [`getGlobalTime()`](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelHit.html#a1d541acb02366d25691b2114613a8521))

  ([`getLocalTime()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelhit/#function-getlocaltime),

   [`getGlobalTime()`](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelhit/#function-getglobaltime))





For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classallpix_1_1PixelHit.html).

For more details refer to the [code reference](https://allpix-squared.docs.cern.ch/reference/classes/classallpix_1_1pixelhit/).





[@pdg]: http://hepdata.cedar.ac.uk/lbl/2016/reviews/rpp2016-rev-monte-carlo-numbering.pdf