...
 
Commits (2)
./test/data/AmrexCastro/hydro_tests/** filter=lfs diff=lfs merge=lfs -text
.buildpath
.project
import Glob
include("../helper/helperSystem.jl")
mutable struct AmrexCastro <: AbstractAmrex
app::String
......@@ -33,14 +34,7 @@ end
function get_dependent_variable_datasize(extractor::AmrexCastro)
findDelimiter = findlast("/",extractor.outputPrefix)
println(extractor.outputPrefix)
println(findDelimiter)
searchDirectory = extractor.outputPrefix[ 1: findDelimiter[1]-1 ]
prefix = extractor.outputPrefix[ findDelimiter[1]+1:end]
println("Search directory: ", searchDirectory, " prefix: ", prefix)
outputDirs = Glob.glob( string(prefix,"*"), searchDirectory )
outputDirs = helper_get_prefix_directories(extractor.outputPrefix)
println(outputDirs)
end
......
import Glob
function helper_get_prefix_directories(prefix::String)::Array{String}
findDelimiter = findlast("/",prefix)
searchDirectory = prefix[ 1: findDelimiter[1]-1 ]
print(searchDirectory)
pattern = string(prefix[ findDelimiter[1]+1:end],"*")
outputDirs = Glob.glob( pattern, searchDirectory )
return outputDirs
end
\ No newline at end of file
# COPY OF AMREX CASTRO LICENSE
Copyright (c) 2017, The Regents of the University of California,
through Lawrence Berkeley National Laboratory and the Alliance for
Sustainable Energy, LLC., through National Renewable Energy Laboratory
......
&fortin
r_init = 0.01
p_ambient = 1.d-6
exp_energy = 1.0
dens_ambient = 1.0
nsub = 10
/
&tagging
denerr = 3
dengrad = 0.01
max_denerr_lev = 3
max_dengrad_lev = 3
presserr = 3
pressgrad = 0.01
max_presserr_lev = 3
max_pressgrad_lev = 3
/
&extern
eos_assume_neutral = T
/
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==============================================================================
Castro Job Information
==============================================================================
job name: Castro
inputs file: inputs.2d.cyl_in_cartcoords
number of MPI processes: 4
number of threads: 16
hydro tile size: (1024,16)
CPU time used since start of simulation (CPU-hours): 0.334506
==============================================================================
Plotfile Information
==============================================================================
output date / time: Fri May 1 13:58:59 2020
output dir: /home/wgodoy/workspace/Castro/Exec/hydro_tests/Sedov/case1
I/O time (s): 0.00132704
==============================================================================
Build Information
==============================================================================
build date: 2020-04-30 15:28:58.868628
build machine: Linux wgodoy-desktop 5.3.0-51-generic #44~18.04.2-Ubuntu SMP Thu Apr 23 14:27:18 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
build dir: /home/wgodoy/workspace/Castro/Exec/hydro_tests/Sedov
AMReX dir: /home/wgodoy/workspace/Castro/external/amrex
COMP: gnu
COMP version: 7.5.0
C++ compiler: mpicxx
C++ flags: -Werror=return-type -g -O3 -fopenmp -pthread -DBL_USE_MPI -DAMREX_USE_MPI -DBL_USE_OMP -DAMREX_USE_OMP -DGPU_COMPATIBLE_PROBLEM -DAMREX_GIT_VERSION="60d291de4ffa" -DBL_GCC_VERSION=7.5.0 -DBL_GCC_MAJOR_VERSION=7 -DBL_GCC_MINOR_VERSION=5 -DAMREX_LAUNCH= -DAMREX_DEVICE= -DAMREX_CUDA_FORT_GLOBAL= -DAMREX_CUDA_FORT_DEVICE= -DAMREX_CUDA_FORT_HOST= -DAMREX_CUDA_FORT_HOST_DEVICE= -DBL_SPACEDIM=2 -DAMREX_SPACEDIM=2 -DBL_FORT_USE_UNDERSCORE -DAMREX_FORT_USE_UNDERSCORE -DBL_Linux -DAMREX_Linux -DAMREX_DIMENSION_AGNOSTIC -DCRSEGRNDOMP -DSPONGE -DPROB_PARAMS -I. -I/home/wgodoy/workspace/Castro/external/amrex/Src/Base -I/home/wgodoy/workspace/Castro/external/amrex/Src/AmrCore -I/home/wgodoy/workspace/Castro/external/amrex/Src/Amr -I/home/wgodoy/workspace/Castro/external/amrex/Src/Boundary -I/home/wgodoy/workspace/Castro/external/Microphysics/util -I. -I../../../Source/driver -I../../../Source/hydro -I../../../Source/problems -I../../../Source/sources -I../../../Source/scf -I../../../Util/model_parser -I../../../Util/conservative_interpolate -I/home/wgodoy/workspace/Castro/external/Microphysics/EOS -I/home/wgodoy/workspace/Castro/external/Microphysics/EOS/gamma_law -I/home/wgodoy/workspace/Castro/external/Microphysics/networks/general_null -I/home/wgodoy/workspace/Castro/external/Microphysics/EOS -I/home/wgodoy/workspace/Castro/external/Microphysics/networks -I/home/wgodoy/workspace/Castro/external/Microphysics/interfaces -I/home/wgodoy/workspace/Castro/external/Microphysics/constants -Itmp_build_dir/castro_sources/2d.gnu.MPI.OMP.EXE -I/home/wgodoy/workspace/Castro/external/amrex/Tools/C_scripts
Fortran comp: mpif90
Fortran flags: -g -O3 -ffree-line-length-none -fno-range-check -fno-second-underscore -fimplicit-none -fopenmp
Link flags: -L. -L/usr/lib/gcc/x86_64-linux-gnu/7/
Libraries: -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr//lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lmpi_cxx -lmpi -lgfortran -lquadmath
EOS: /home/wgodoy/workspace/Castro/external/Microphysics/EOS/gamma_law
NETWORK: /home/wgodoy/workspace/Castro/external/Microphysics/networks/general_null
Castro git describe: 20.04.1-12-g7d89c9044-dirty
AMReX git describe: 60d291de4
Microphysics git describe: 20.04
==============================================================================
Grid Information
==============================================================================
level: 0
number of boxes = 1
maximum zones = 16 16
level: 1
number of boxes = 1
maximum zones = 32 32
level: 2
number of boxes = 1
maximum zones = 64 64
Boundary conditions
-x: outflow
+x: outflow
-y: outflow
+y: outflow
Domain geometry info
center: 0.5 , 0.5 , 0
geometry.is_periodic: 0 0
geometry.coord_sys: 0
geometry.prob_lo: 0 0
geometry.prob_hi: 1 1
amr.n_cell: 16 16
amr.max_level: 2
amr.ref_ratio: 2 2
==============================================================================
Species Information
==============================================================================
index name A Z
------------------------------------------------------------------------------
0 X 1 1
==============================================================================
Inputs File Parameters
==============================================================================
castro.state_interp_order = 1
castro.lin_limit_state_interp = 0
castro.state_nghost = 0
castro.do_reflux = 1
castro.update_sources_after_reflux = 1
castro.apply_sources_consecutively = 0
castro.difmag = 0.1
[*] castro.small_dens = 1e-200
[*] castro.small_temp = 1e-200
[*] castro.small_pres = 1e-200
[*] castro.small_ener = 1e-200
[*] castro.do_hydro = 1
castro.time_integration_method = 0
castro.limit_fourth_order = 1
castro.initialization_is_cell_average = 0
castro.use_reconstructed_gamma1 = 0
castro.add_ext_src = 0
castro.hybrid_hydro = 0
castro.ppm_type = 1
castro.ppm_temp_fix = 0
castro.plm_iorder = 2
castro.plm_limiter = 2
castro.hybrid_riemann = 0
castro.riemann_solver = 0
castro.cg_maxiter = 12
castro.cg_tol = 1e-05
castro.cg_blend = 2
castro.use_eos_in_riemann = 0
castro.use_flattening = 1
castro.transverse_use_eos = 0
castro.transverse_reset_density = 1
castro.transverse_reset_rhoe = 0
castro.dual_energy_eta1 = 1
castro.dual_energy_eta2 = 0.0001
castro.use_pslope = 1
castro.pslope_cutoff_density = -1e+20
castro.limit_fluxes_on_small_dens = 0
castro.limit_fluxes_on_large_vel = 0
castro.speed_limit = 2.99792e+10
castro.density_reset_method = 1
castro.do_sponge = 0
castro.sponge_implicit = 1
castro.ext_src_implicit = 0
castro.source_term_predictor = 0
castro.first_order_hydro = 0
castro.xl_ext_bc_type = fillme
castro.xr_ext_bc_type = fillme
castro.yl_ext_bc_type = fillme
castro.yr_ext_bc_type = fillme
castro.zl_ext_bc_type = fillme
castro.zr_ext_bc_type = fillme
castro.hse_zero_vels = 0
castro.hse_interp_temp = 0
castro.hse_reflect_vels = 0
castro.fill_ambient_bc = 0
castro.ambient_fill_dir = -1
castro.ambient_outflow_vel = 0
castro.clamp_ambient_temp = 0
castro.ambient_safety_factor = 1.1
castro.sdc_order = 2
castro.sdc_quadrature = 0
castro.sdc_extra = 0
castro.sdc_solver = 1
castro.sdc_solver_tol_dens = 1e-06
castro.sdc_solver_tol_spec = 1e-06
castro.sdc_solver_tol_ener = 1e-06
castro.sdc_solver_atol = 1e-10
castro.sdc_solver_relax_factor = 1
castro.sdc_solve_for_rhoe = 1
castro.sdc_use_analytic_jac = 1
castro.fixed_dt = -1
castro.initial_dt = -1
castro.dt_cutoff = 1e-12
castro.max_dt = 1e+200
[*] castro.cfl = 0.5
[*] castro.init_shrink = 0.01
castro.change_max = 1.1
castro.plot_per_is_exact = 0
castro.small_plot_per_is_exact = 0
castro.use_retry = 1
castro.retry_subcycle_factor = 0.5
castro.use_post_step_regrid = 0
castro.max_subcycles = 10
castro.sdc_iters = 2
castro.dtnuc_e = 1e+200
castro.dtnuc_X = 1e+200
castro.dtnuc_X_threshold = 0.001
[*] castro.do_react = 0
castro.react_T_min = 0
castro.react_T_max = 1e+200
castro.react_rho_min = 0
castro.react_rho_max = 1e+200
castro.disable_shock_burning = 0
castro.T_guess = 1e+08
castro.reactions_max_solve_level = 100
castro.do_grav = -1
castro.moving_center = 0
castro.grav_source_type = 4
castro.do_rotation = -1
castro.do_acc = -1
castro.bndry_func_thread_safe = 1
castro.grown_factor = 1
castro.star_at_center = -1
castro.do_scf_initial_model = 0
castro.scf_maximum_density = -1e+06
castro.scf_equatorial_radius = -1e+09
castro.scf_polar_radius = -1e+09
castro.scf_relax_tol = 0.001
castro.scf_max_iterations = 30
castro.do_special_tagging = 0
castro.spherical_star = 0
[*] castro.verbose = 1
castro.dump_old = 0
castro.print_fortran_warnings = 0
castro.print_update_diagnostics = 0
castro.track_grid_losses = 0
[*] castro.sum_interval = 1
castro.sum_per = -1
castro.show_center_of_mass = 0
castro.job_name = Castro
castro.output_at_completion = 1
castro.reset_checkpoint_time = -1e+200
castro.reset_checkpoint_step = -1
eos_gamma = 1.666666667
eos_assume_neutral = T
small_x = 0.1000000000E-29
use_tables = F
use_c12ag_deboer17 = F
fortin parameters:
[*] p_ambient = 0.1000000000E-05
dens_ambient = 1.000000000
exp_energy = 1.000000000
[*] temp_ambient = 0.1202723619E-13
[*] r_init = 0.1000000000E-01
[*] nsub = 10
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==============================================================================
Castro Job Information
==============================================================================
job name: Castro
inputs file: inputs.2d.cyl_in_cartcoords
number of MPI processes: 4
number of threads: 16
hydro tile size: (1024,16)
CPU time used since start of simulation (CPU-hours): 9.80337
==============================================================================
Plotfile Information
==============================================================================
output date / time: Fri May 1 14:07:52 2020
output dir: /home/wgodoy/workspace/Castro/Exec/hydro_tests/Sedov/case1
I/O time (s): 0.00110198
==============================================================================
Build Information
==============================================================================
build date: 2020-04-30 15:28:58.868628
build machine: Linux wgodoy-desktop 5.3.0-51-generic #44~18.04.2-Ubuntu SMP Thu Apr 23 14:27:18 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
build dir: /home/wgodoy/workspace/Castro/Exec/hydro_tests/Sedov
AMReX dir: /home/wgodoy/workspace/Castro/external/amrex
COMP: gnu
COMP version: 7.5.0
C++ compiler: mpicxx
C++ flags: -Werror=return-type -g -O3 -fopenmp -pthread -DBL_USE_MPI -DAMREX_USE_MPI -DBL_USE_OMP -DAMREX_USE_OMP -DGPU_COMPATIBLE_PROBLEM -DAMREX_GIT_VERSION="60d291de4ffa" -DBL_GCC_VERSION=7.5.0 -DBL_GCC_MAJOR_VERSION=7 -DBL_GCC_MINOR_VERSION=5 -DAMREX_LAUNCH= -DAMREX_DEVICE= -DAMREX_CUDA_FORT_GLOBAL= -DAMREX_CUDA_FORT_DEVICE= -DAMREX_CUDA_FORT_HOST= -DAMREX_CUDA_FORT_HOST_DEVICE= -DBL_SPACEDIM=2 -DAMREX_SPACEDIM=2 -DBL_FORT_USE_UNDERSCORE -DAMREX_FORT_USE_UNDERSCORE -DBL_Linux -DAMREX_Linux -DAMREX_DIMENSION_AGNOSTIC -DCRSEGRNDOMP -DSPONGE -DPROB_PARAMS -I. -I/home/wgodoy/workspace/Castro/external/amrex/Src/Base -I/home/wgodoy/workspace/Castro/external/amrex/Src/AmrCore -I/home/wgodoy/workspace/Castro/external/amrex/Src/Amr -I/home/wgodoy/workspace/Castro/external/amrex/Src/Boundary -I/home/wgodoy/workspace/Castro/external/Microphysics/util -I. -I../../../Source/driver -I../../../Source/hydro -I../../../Source/problems -I../../../Source/sources -I../../../Source/scf -I../../../Util/model_parser -I../../../Util/conservative_interpolate -I/home/wgodoy/workspace/Castro/external/Microphysics/EOS -I/home/wgodoy/workspace/Castro/external/Microphysics/EOS/gamma_law -I/home/wgodoy/workspace/Castro/external/Microphysics/networks/general_null -I/home/wgodoy/workspace/Castro/external/Microphysics/EOS -I/home/wgodoy/workspace/Castro/external/Microphysics/networks -I/home/wgodoy/workspace/Castro/external/Microphysics/interfaces -I/home/wgodoy/workspace/Castro/external/Microphysics/constants -Itmp_build_dir/castro_sources/2d.gnu.MPI.OMP.EXE -I/home/wgodoy/workspace/Castro/external/amrex/Tools/C_scripts
Fortran comp: mpif90
Fortran flags: -g -O3 -ffree-line-length-none -fno-range-check -fno-second-underscore -fimplicit-none -fopenmp
Link flags: -L. -L/usr/lib/gcc/x86_64-linux-gnu/7/
Libraries: -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr//lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lmpi_cxx -lmpi -lgfortran -lquadmath
EOS: /home/wgodoy/workspace/Castro/external/Microphysics/EOS/gamma_law
NETWORK: /home/wgodoy/workspace/Castro/external/Microphysics/networks/general_null
Castro git describe: 20.04.1-12-g7d89c9044-dirty
AMReX git describe: 60d291de4