Initial skeleton of the project

src/Exio.jl

@@ -6,18 +6,21 @@ include("extractor/extractor.jl")
 
 mutable struct ExioH
   extractor::AbstractExtractor
+  
+  ExioH() = new()
 end
   
 
 function exio_init(app::String, outputPrefix::String)
 
+  exioH = ExioH()
   if app == "AmrexCastro"
     println("Hello AmrexCastro")
-    extractor::AmrexCastro
-    init(extractor, outputPrefix)
+    exioH.extractor = AmrexCastro()
+    init(exioH.extractor, outputPrefix)
   end
 
-  return ExioH(extractor)  
+  return exioH  
 end
   
 

src/extractor/amrex.jl

 
-mutable struct Amrex <: AbstractExtractor 
+abstract type AbstractAmrex <: AbstractExtractor end
+
+mutable struct Amrex <: AbstractAmrex 
   app::String
   outputPrefix::String
   degreesOfFreedom
+  
+  Amrex() = new()
 end
 
 function init(extractor::Amrex, outputPrefix::String)
   extractor.app = "Amrex"
   extractor.outputPrefix = outputPrefix
-  extractor.degressOfFreedom = [ 
+  extractor.degreesOfFreedom = [ 
             "max_step", 
             "amr.check_int",
             "amr.plot_int",
             "amr.n_cell",
             "amr.max_level"
         ]
+end
+
+
+function input_parser(inputFile::String) 
+  parameters = Dict{String,String}()
+  
+  fileContents = readlines(inputFile)
+  
+  print(fileContents)
+  
 end
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src/extractor/amrexCastro.jl

 
-mutable struct AmrexCastro <: AbstractExtractor
+mutable struct AmrexCastro <: AbstractAmrex
   app::String
   degreesOfFreedom
   outputPrefix::String
+  
+  AmrexCastro() = new()
 end
 
 function init(extractor::AmrexCastro, outputPrefix::String)
   extractor.app = "AmrexCastro"
-  extractor.degressOfFreedom = [ 
+  extractor.degreesOfFreedom = [ 
             "max_step", 
             "amr.check_int",
             "amr.plot_int",

test/data/amrexCastro/LICENSE

+Copyright (c) 2017, The Regents of the University of California,
+through Lawrence Berkeley National Laboratory and the Alliance for
+Sustainable Energy, LLC., through National Renewable Energy Laboratory
+(subject to receipt of any required approvals from the U.S. Dept. of
+Energy).  All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are
+met:
+
+(1) Redistributions of source code must retain the above copyright
+notice, this list of conditions and the following disclaimer.
+
+(2) Redistributions in binary form must reproduce the above copyright
+notice, this list of conditions and the following disclaimer in the
+documentation and/or other materials provided with the distribution.
+
+(3) Neither the name of the University of California, Lawrence
+Berkeley National Laboratory, Alliance for Sustainable Energy, LLC.,
+National Renewable Energy Laboratory, U.S. Dept. of Energy nor the
+names of its contributors may be used to endorse or promote products
+derived from this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
+ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE 
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL 
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR 
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER 
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, 
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
\ No newline at end of file

test/data/amrexCastro/test_data_amrex_castro_inputs.2d.cyl_in_cartcoords

+# ------------------  INPUTS TO MAIN PROGRAM  -------------------
+max_step = 20
+stop_time = 0.1
+
+# PROBLEM SIZE & GEOMETRY
+geometry.is_periodic =  0 0
+geometry.coord_sys   =  0       # 0 => cart
+geometry.prob_lo     =  0    0
+geometry.prob_hi     =  1    1
+amr.n_cell           = 16   16
+
+# >>>>>>>>>>>>>  BC FLAGS <<<<<<<<<<<<<<<<
+# 0 = Interior           3 = Symmetry
+# 1 = Inflow             4 = SlipWall
+# 2 = Outflow            5 = NoSlipWall
+# >>>>>>>>>>>>>  BC FLAGS <<<<<<<<<<<<<<<<
+castro.lo_bc       =  2   2
+castro.hi_bc       =  2   2
+
+# WHICH PHYSICS
+castro.do_hydro = 1
+castro.do_react = 0
+
+# TIME STEP CONTROL
+castro.cfl            = 0.5     # cfl number for hyperbolic system Courant-Friedrichs-Lewy condition
+castro.init_shrink    = 0.01    # scale back initial timestep
+castro.change_max     = 1.1     # maximum increase in dt over successive steps
+
+# DIAGNOSTICS & VERBOSITY
+castro.sum_interval   = 1       # timesteps between computing mass
+castro.v              = 1       # verbosity in Castro.cpp
+amr.v                 = 1       # verbosity in Amr.cpp 
+#amr.grid_log         = grdlog  # name of grid logging file
+
+# REFINEMENT / REGRIDDING
+amr.max_level       = 2       # maximum level number allowed
+amr.ref_ratio       = 2 2 2 2 # refinement ratio
+amr.regrid_int      = 2       # how often to regrid
+amr.blocking_factor = 8       # block factor in grid generation
+amr.max_grid_size   = 128
+
+# CHECKPOINT FILES
+amr.check_file      = sedov_2d_cyl_in_cart_chk   # root name of checkpoint file
+amr.check_int       = 20       # number of timesteps between checkpoints
+
+# PLOTFILES
+amr.plot_file       = sedov_2d_cyl_in_cart_plt
+amr.plot_int        = 20
+amr.derive_plot_vars=ALL
+
+# PROBIN FILENAME
+amr.probin_file = probin.2d.cyl_in_cartcoords

test/runtests.jl

 
 using Test
-import Exio
 
+import Exio
 
-exio = Exio.exio_init("AmrexCastro", ".")
+@testset "test_amrexCastro" begin
+   include("test_amrexCastro.jl")
+end;

test/test_amrexCastro.jl

+
+
+exio = Exio.exio_init("AmrexCastro", ".")
+
+@test typeof(exio) == Exio.ExioH
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