Add git lfs support for test data

.gitattributes

+./test/data/AmrexCastro/hydro_tests/** filter=lfs diff=lfs merge=lfs -text

.gitignore

+.buildpath
+.project
+

src/extractor/AmrexCastro.jl

 
-import Glob
+include("../helper/helperSystem.jl")
+  
 
 mutable struct AmrexCastro <: AbstractAmrex
     app::String
@@ -33,14 +34,7 @@ end
 
 function get_dependent_variable_datasize(extractor::AmrexCastro)
    
-   findDelimiter = findlast("/",extractor.outputPrefix)
-   println(extractor.outputPrefix)
-   println(findDelimiter)
-   
-   searchDirectory = extractor.outputPrefix[ 1: findDelimiter[1]-1 ]
-   prefix =  extractor.outputPrefix[ findDelimiter[1]+1:end]
-   println("Search directory: ", searchDirectory, " prefix: ", prefix)
-   outputDirs = Glob.glob( string(prefix,"*"), searchDirectory )
+   outputDirs = helper_get_prefix_directories(extractor.outputPrefix)
    println(outputDirs)
   
 end

src/helper/helperSystem.jl

+
+import Glob
+
+
+function helper_get_prefix_directories(prefix::String)::Array{String}
+  findDelimiter = findlast("/",prefix)
+  searchDirectory = prefix[ 1: findDelimiter[1]-1 ]
+    print(searchDirectory)
+    
+  pattern =  string(prefix[ findDelimiter[1]+1:end],"*")
+  outputDirs = Glob.glob( pattern, searchDirectory )
+  return outputDirs
+end
\ No newline at end of file

test/data/amrexCastro/LICENSE → test/data/AmrexCastro/LICENSE

+# COPY OF AMREX CASTRO LICENSE 
 Copyright (c) 2017, The Regents of the University of California,
 through Lawrence Berkeley National Laboratory and the Alliance for
 Sustainable Energy, LLC., through National Renewable Energy Laboratory

test/data/AmrexCastro/hydro_tests/Sedov/2d.cyl_in_cartcoords/case1/probin.2d.cyl_in_cartcoords

+&fortin
+
+  r_init = 0.01
+  p_ambient = 1.d-6
+  exp_energy = 1.0
+  dens_ambient = 1.0
+  nsub = 10
+
+/
+
+&tagging
+
+  denerr = 3
+  dengrad = 0.01
+  max_denerr_lev = 3
+  max_dengrad_lev = 3
+
+  presserr = 3
+  pressgrad = 0.01
+  max_presserr_lev = 3
+  max_pressgrad_lev = 3
+
+/
+
+&extern
+
+  eos_assume_neutral = T
+
+/

test/data/AmrexCastro/hydro_tests/Sedov/2d.cyl_in_cartcoords/case1/sedov_2d_cyl_in_cart_chk00000/CPUtime

+1204.2397048957646
\ No newline at end of file

test/data/AmrexCastro/hydro_tests/Sedov/2d.cyl_in_cartcoords/case1/sedov_2d_cyl_in_cart_chk00000/CastroHeader

+Checkpoint version: 7

test/data/AmrexCastro/hydro_tests/Sedov/2d.cyl_in_cartcoords/case1/sedov_2d_cyl_in_cart_chk00000/FabArrayHeaders.txt

+Level_0/SD_0_New_MF
+Level_0/SD_1_New_MF
+Level_1/SD_0_New_MF
+Level_1/SD_1_New_MF
+Level_2/SD_0_New_MF
+Level_2/SD_1_New_MF

test/data/AmrexCastro/hydro_tests/Sedov/2d.cyl_in_cartcoords/case1/sedov_2d_cyl_in_cart_chk00000/Header

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test/data/AmrexCastro/hydro_tests/Sedov/2d.cyl_in_cartcoords/case1/sedov_2d_cyl_in_cart_chk00000/Level_0/SD_0_New_MF_H

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+

test/data/AmrexCastro/hydro_tests/Sedov/2d.cyl_in_cartcoords/case1/sedov_2d_cyl_in_cart_chk00000/Level_0/SD_1_New_MF_H

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+

test/data/AmrexCastro/hydro_tests/Sedov/2d.cyl_in_cartcoords/case1/sedov_2d_cyl_in_cart_chk00000/Level_1/SD_1_New_MF_H

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test/data/AmrexCastro/hydro_tests/Sedov/2d.cyl_in_cartcoords/case1/sedov_2d_cyl_in_cart_chk00000/Level_2/SD_1_New_MF_H

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