Commit 0e16d316 authored by William F Godoy's avatar William F Godoy
Browse files

Add git lfs support for test data

parent 1feb1e2e
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==============================================================================
Castro Job Information
==============================================================================
job name: Castro
inputs file: inputs.2d.cyl_in_cartcoords
number of MPI processes: 2
number of threads: 16
hydro tile size: (1024,16)
CPU time used since start of simulation (CPU-hours): 2.05501
==============================================================================
Plotfile Information
==============================================================================
output date / time: Tue May 5 09:55:23 2020
output dir: /home/wgodoy/workspace/Castro/Exec/hydro_tests/Sedov/case5
I/O time (s): 0.00103963
==============================================================================
Build Information
==============================================================================
build date: 2020-04-30 15:28:58.868628
build machine: Linux wgodoy-desktop 5.3.0-51-generic #44~18.04.2-Ubuntu SMP Thu Apr 23 14:27:18 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
build dir: /home/wgodoy/workspace/Castro/Exec/hydro_tests/Sedov
AMReX dir: /home/wgodoy/workspace/Castro/external/amrex
COMP: gnu
COMP version: 7.5.0
C++ compiler: mpicxx
C++ flags: -Werror=return-type -g -O3 -fopenmp -pthread -DBL_USE_MPI -DAMREX_USE_MPI -DBL_USE_OMP -DAMREX_USE_OMP -DGPU_COMPATIBLE_PROBLEM -DAMREX_GIT_VERSION="60d291de4ffa" -DBL_GCC_VERSION=7.5.0 -DBL_GCC_MAJOR_VERSION=7 -DBL_GCC_MINOR_VERSION=5 -DAMREX_LAUNCH= -DAMREX_DEVICE= -DAMREX_CUDA_FORT_GLOBAL= -DAMREX_CUDA_FORT_DEVICE= -DAMREX_CUDA_FORT_HOST= -DAMREX_CUDA_FORT_HOST_DEVICE= -DBL_SPACEDIM=2 -DAMREX_SPACEDIM=2 -DBL_FORT_USE_UNDERSCORE -DAMREX_FORT_USE_UNDERSCORE -DBL_Linux -DAMREX_Linux -DAMREX_DIMENSION_AGNOSTIC -DCRSEGRNDOMP -DSPONGE -DPROB_PARAMS -I. -I/home/wgodoy/workspace/Castro/external/amrex/Src/Base -I/home/wgodoy/workspace/Castro/external/amrex/Src/AmrCore -I/home/wgodoy/workspace/Castro/external/amrex/Src/Amr -I/home/wgodoy/workspace/Castro/external/amrex/Src/Boundary -I/home/wgodoy/workspace/Castro/external/Microphysics/util -I. -I../../../Source/driver -I../../../Source/hydro -I../../../Source/problems -I../../../Source/sources -I../../../Source/scf -I../../../Util/model_parser -I../../../Util/conservative_interpolate -I/home/wgodoy/workspace/Castro/external/Microphysics/EOS -I/home/wgodoy/workspace/Castro/external/Microphysics/EOS/gamma_law -I/home/wgodoy/workspace/Castro/external/Microphysics/networks/general_null -I/home/wgodoy/workspace/Castro/external/Microphysics/EOS -I/home/wgodoy/workspace/Castro/external/Microphysics/networks -I/home/wgodoy/workspace/Castro/external/Microphysics/interfaces -I/home/wgodoy/workspace/Castro/external/Microphysics/constants -Itmp_build_dir/castro_sources/2d.gnu.MPI.OMP.EXE -I/home/wgodoy/workspace/Castro/external/amrex/Tools/C_scripts
Fortran comp: mpif90
Fortran flags: -g -O3 -ffree-line-length-none -fno-range-check -fno-second-underscore -fimplicit-none -fopenmp
Link flags: -L. -L/usr/lib/gcc/x86_64-linux-gnu/7/
Libraries: -pthread -I/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr//lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lmpi_cxx -lmpi -lgfortran -lquadmath
EOS: /home/wgodoy/workspace/Castro/external/Microphysics/EOS/gamma_law
NETWORK: /home/wgodoy/workspace/Castro/external/Microphysics/networks/general_null
Castro git describe: 20.04.1-12-g7d89c9044-dirty
AMReX git describe: 60d291de4
Microphysics git describe: 20.04
==============================================================================
Grid Information
==============================================================================
level: 0
number of boxes = 2
maximum zones = 64 64
level: 1
number of boxes = 2
maximum zones = 128 128
level: 2
number of boxes = 2
maximum zones = 256 256
Boundary conditions
-x: outflow
+x: outflow
-y: outflow
+y: outflow
Domain geometry info
center: 0.5 , 0.5 , 0
geometry.is_periodic: 0 0
geometry.coord_sys: 0
geometry.prob_lo: 0 0
geometry.prob_hi: 1 1
amr.n_cell: 64 64
amr.max_level: 2
amr.ref_ratio: 2 2
==============================================================================
Species Information
==============================================================================
index name A Z
------------------------------------------------------------------------------
0 X 1 1
==============================================================================
Inputs File Parameters
==============================================================================
castro.state_interp_order = 1
castro.lin_limit_state_interp = 0
castro.state_nghost = 0
castro.do_reflux = 1
castro.update_sources_after_reflux = 1
castro.apply_sources_consecutively = 0
castro.difmag = 0.1
[*] castro.small_dens = 1e-200
[*] castro.small_temp = 1e-200
[*] castro.small_pres = 1e-200
[*] castro.small_ener = 1e-200
[*] castro.do_hydro = 1
castro.time_integration_method = 0
castro.limit_fourth_order = 1
castro.initialization_is_cell_average = 0
castro.use_reconstructed_gamma1 = 0
castro.add_ext_src = 0
castro.hybrid_hydro = 0
castro.ppm_type = 1
castro.ppm_temp_fix = 0
castro.plm_iorder = 2
castro.plm_limiter = 2
castro.hybrid_riemann = 0
castro.riemann_solver = 0
castro.cg_maxiter = 12
castro.cg_tol = 1e-05
castro.cg_blend = 2
castro.use_eos_in_riemann = 0
castro.use_flattening = 1
castro.transverse_use_eos = 0
castro.transverse_reset_density = 1
castro.transverse_reset_rhoe = 0
castro.dual_energy_eta1 = 1
castro.dual_energy_eta2 = 0.0001
castro.use_pslope = 1
castro.pslope_cutoff_density = -1e+20
castro.limit_fluxes_on_small_dens = 0
castro.limit_fluxes_on_large_vel = 0
castro.speed_limit = 2.99792e+10
castro.density_reset_method = 1
castro.do_sponge = 0
castro.sponge_implicit = 1
castro.ext_src_implicit = 0
castro.source_term_predictor = 0
castro.first_order_hydro = 0
castro.xl_ext_bc_type = fillme
castro.xr_ext_bc_type = fillme
castro.yl_ext_bc_type = fillme
castro.yr_ext_bc_type = fillme
castro.zl_ext_bc_type = fillme
castro.zr_ext_bc_type = fillme
castro.hse_zero_vels = 0
castro.hse_interp_temp = 0
castro.hse_reflect_vels = 0
castro.fill_ambient_bc = 0
castro.ambient_fill_dir = -1
castro.ambient_outflow_vel = 0
castro.clamp_ambient_temp = 0
castro.ambient_safety_factor = 1.1
castro.sdc_order = 2
castro.sdc_quadrature = 0
castro.sdc_extra = 0
castro.sdc_solver = 1
castro.sdc_solver_tol_dens = 1e-06
castro.sdc_solver_tol_spec = 1e-06
castro.sdc_solver_tol_ener = 1e-06
castro.sdc_solver_atol = 1e-10
castro.sdc_solver_relax_factor = 1
castro.sdc_solve_for_rhoe = 1
castro.sdc_use_analytic_jac = 1
castro.fixed_dt = -1
castro.initial_dt = -1
castro.dt_cutoff = 1e-12
castro.max_dt = 1e+200
[*] castro.cfl = 0.5
[*] castro.init_shrink = 0.01
castro.change_max = 1.1
castro.plot_per_is_exact = 0
castro.small_plot_per_is_exact = 0
castro.use_retry = 1
castro.retry_subcycle_factor = 0.5
castro.use_post_step_regrid = 0
castro.max_subcycles = 10
castro.sdc_iters = 2
castro.dtnuc_e = 1e+200
castro.dtnuc_X = 1e+200
castro.dtnuc_X_threshold = 0.001
[*] castro.do_react = 0
castro.react_T_min = 0
castro.react_T_max = 1e+200
castro.react_rho_min = 0
castro.react_rho_max = 1e+200
castro.disable_shock_burning = 0
castro.T_guess = 1e+08
castro.reactions_max_solve_level = 100
castro.do_grav = -1
castro.moving_center = 0
castro.grav_source_type = 4
castro.do_rotation = -1
castro.do_acc = -1
castro.bndry_func_thread_safe = 1
castro.grown_factor = 1
castro.star_at_center = -1
castro.do_scf_initial_model = 0
castro.scf_maximum_density = -1e+06
castro.scf_equatorial_radius = -1e+09
castro.scf_polar_radius = -1e+09
castro.scf_relax_tol = 0.001
castro.scf_max_iterations = 30
castro.do_special_tagging = 0
castro.spherical_star = 0
[*] castro.verbose = 1
castro.dump_old = 0
castro.print_fortran_warnings = 0
castro.print_update_diagnostics = 0
castro.track_grid_losses = 0
[*] castro.sum_interval = 1
castro.sum_per = -1
castro.show_center_of_mass = 0
castro.job_name = Castro
castro.output_at_completion = 1
castro.reset_checkpoint_time = -1e+200
castro.reset_checkpoint_step = -1
eos_gamma = 1.666666667
eos_assume_neutral = T
small_x = 0.1000000000E-29
use_tables = F
use_c12ag_deboer17 = F
fortin parameters:
[*] p_ambient = 0.1000000000E-05
dens_ambient = 1.000000000
exp_energy = 1.000000000
[*] temp_ambient = 0.1202723619E-13
[*] r_init = 0.1000000000E-01
[*] nsub = 10
# ------------------ INPUTS TO MAIN PROGRAM -------------------
max_step = 20
stop_time = 0.1
# PROBLEM SIZE & GEOMETRY
geometry.is_periodic = 0 0
geometry.coord_sys = 0 # 0 => cart
geometry.prob_lo = 0 0
geometry.prob_hi = 1 1
amr.n_cell = 16 16
# >>>>>>>>>>>>> BC FLAGS <<<<<<<<<<<<<<<<
# 0 = Interior 3 = Symmetry
# 1 = Inflow 4 = SlipWall
# 2 = Outflow 5 = NoSlipWall
# >>>>>>>>>>>>> BC FLAGS <<<<<<<<<<<<<<<<
castro.lo_bc = 2 2
castro.hi_bc = 2 2
# WHICH PHYSICS
castro.do_hydro = 1
castro.do_react = 0
# TIME STEP CONTROL
castro.cfl = 0.5 # cfl number for hyperbolic system Courant-Friedrichs-Lewy condition
castro.init_shrink = 0.01 # scale back initial timestep
castro.change_max = 1.1 # maximum increase in dt over successive steps
# DIAGNOSTICS & VERBOSITY
castro.sum_interval = 1 # timesteps between computing mass
castro.v = 1 # verbosity in Castro.cpp
amr.v = 1 # verbosity in Amr.cpp
#amr.grid_log = grdlog # name of grid logging file
# REFINEMENT / REGRIDDING
amr.max_level = 2 # maximum level number allowed
amr.ref_ratio = 2 2 2 2 # refinement ratio
amr.regrid_int = 2 # how often to regrid
amr.blocking_factor = 8 # block factor in grid generation
amr.max_grid_size = 128
# CHECKPOINT FILES
amr.check_file = sedov_2d_cyl_in_cart_chk # root name of checkpoint file
amr.check_int = 20 # number of timesteps between checkpoints
# PLOTFILES
amr.plot_file = sedov_2d_cyl_in_cart_plt
amr.plot_int = 20
amr.derive_plot_vars=ALL
# PROBIN FILENAME
amr.probin_file = probin.2d.cyl_in_cartcoords
......@@ -3,7 +3,7 @@ using Test, Base.Filesystem
import Exio
@testset "test_amrexCastro" begin
@testset "test_AmrexCastro" begin
include("test_AmrexCastro.jl")
end;
......
......@@ -16,14 +16,14 @@ function test_value(
end
function test_AmrexCastro()
exio = Exio.exio_init("AmrexCastro", "/home/wgodoy/workspace/Castro/Exec/hydro_tests/Sedov/case")
exio = Exio.exio_init("AmrexCastro", "./test/data/AmrexCastro/hydro_tests/Sedov/2d.cyl_in_cartcoords/case")
@test typeof(exio) == Exio.ExioH
println("Current directory: ", Filesystem.pwd())
inputFile = string(
Filesystem.pwd(),
"/test/data/amrexCastro/test_data_AmrexCastro_inputs.2d.cyl_in_cartcoords",
Filesystem.pwd(), "/",
"test/data/AmrexCastro/test_data_AmrexCastro_inputs.2d.cyl_in_cartcoords",
)
println("Input file: ", inputFile)
......
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