Commit 3a6d7c77 authored by Gao, Shang's avatar Gao, Shang
Browse files

fixed pbs to run on rhea

parent a1595128

moldyn_example/conv_vae.pbs

+4 −1
Original line number Diff line number Diff line
@@ -7,6 +7,9 @@ 


module load cudatoolkit

module load cuda

module unload PE-intel/14.0.4-1.8.4

module load PE-gnu/4.8.2-1.8.4

module load gcc/4.8.2



#clone repo/get latest

cd ${HOME}/
@@ -28,7 +31,7 @@ if [ ! -f 1FME-0_contact_matrix.npy ]; then 
    python dcd2array.py ${HOME}/1fme-0 1:29

fi



python conv_vae.py 1FME-0_contact_matrix.npy

THEANO_FLAGS=device=gpu,floatX=float32,dnn.enabled=False,'gcc.cxxflags=-march=core2' python conv_vae.py 1FME-0_contact_matrix.npy



#cleanup

cd ${HOME}/

moldyn_example/run_experiment.py

+1 −1
Original line number Diff line number Diff line
@@ -38,7 +38,7 @@ for resource in resources: 
                               

#wait for downloads to complete

print "waiting for downloads to complete"

timeout = 600

timeout = 200

start = time.time()

for resource in dl:

    while not cbow.check_resource_exists_endpoint('/~/1fme-0/%s' % resource):