Commit 10ab1746 authored by Gao, Shang's avatar Gao, Shang
Browse files

fixed length of file basename

parent 6264104b

moldyn_example/conv_vae.pbs

+1 −1
Original line number Diff line number Diff line
@@ -25,7 +25,7 @@ export PYTHONPATH=/ccs/home/iamshang/crossbow/crossbow:$PYTHONPATH 
cd ${HOME}/crossbow/moldyn_example/scripts/



if [ ! -f 1FME-0_contact_matrix.npy ]; then

    python dcd2array.py ${HOME}/1fme-0

    python dcd2array.py ${HOME}/1fme-0 1:29

fi



python conv_vae.py 1FME-0_contact_matrix.npy

moldyn_example/scripts/dcd2array.py

+1 −1
Original line number Diff line number Diff line
@@ -23,7 +23,7 @@ if not os.path.exists('./results'): 
files = glob.glob(dcd_path+'*-protein-*.dcd')

n = len(files)

dataset_name = os.path.basename(files[0]).split('-protein-')[0]

file_basename = os.path.basename(files[0])[:-8]

file_basename = os.path.basename(files[0])[:-7]



# process dcd files

k = 0